View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15709_low_1 (Length: 410)
Name: NF15709_low_1
Description: NF15709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15709_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 392
Target Start/End: Original strand, 33571610 - 33572001
Alignment:
| Q |
1 |
tttcttctcctcctcccactcatcgacctaacaacaccaaca------tccccacaatctctttccggcgcaactctccggcaaggcttcccattcccat |
94 |
Q |
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||||| |||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
33571610 |
tttctcctcctcctcccactcaccgacctaacaacaccaacaccaacatccccacaatcactttccggcgcaactctccggcaaggcttcc------cat |
33571703 |
T |
|
| Q |
95 |
caccagaaaacatcacaatctgtttcctaccaaccccacatttctcaccacttttcgttaaagccgagctagccttcacagccaacgccgccatttccac |
194 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||| |
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| T |
33571704 |
caccagaaaacatcacaatctgtttcctaccaaccccacatttctcaccacttttcgttagagccgagctagccttcacggccaacgccgccatttccac |
33571803 |
T |
|
| Q |
195 |
caccggtaacggcttcttcaaccgtgtcaacggcaaagcaaaataaagctgaccaagtctcaaaacctcatcttcatgcatggctaaaacaacatcatcg |
294 |
Q |
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|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33571804 |
caccggcaacggcttcttcaaccgtgtcaacggcaaagcaaaataaagctgaccaagtctcaaaacctcatcttcatgcatggctaaaacaacatcatcg |
33571903 |
T |
|
| Q |
295 |
aatcccatctcatcagaatcacatatgaaacaatcagggtataattgtaatacatacccaaccttaacctcgtacgtgaattctctcatcgtaccatc |
392 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33571904 |
aatcccatctcatcagaatcacatatgaaacaatcagggtataattgtaatacatacccaaccttaacctcgtacgtgaattctctcatcgtaccatc |
33572001 |
T |
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