View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15709_low_3 (Length: 365)
Name: NF15709_low_3
Description: NF15709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15709_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 323; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Original strand, 35278184 - 35278534
Alignment:
| Q |
1 |
tcatcaagatacataaggcgggactaatgcagcagagtgagtagaatggggtatgaaaagaaagagactcaccgttttagcatcccagaattttattgtt |
100 |
Q |
| |
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|||||||| |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35278184 |
tcatcaagttacaaaaggaaggactaatgcagcagagtgagtagaatggggtatgaaaagaaagagactcaccgttttagcatcccagaattttattgtt |
35278283 |
T |
|
| Q |
101 |
ttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgagtcagtaacagaagtagaag |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
35278284 |
ttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgaggcagtaacagaagtagaag |
35278383 |
T |
|
| Q |
201 |
tatccatgttgcaaatgaaaggctgtataaaccacaatataaagataaatacattaattatgcagaccataaaaagatggaattggaaaatttatcgcat |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35278384 |
tatccatgttgcaaatgaaaggctgtataaaccacaatataaagataaatatgttaattatgcagaccataaaaagatggaattggaaaatttatcgcat |
35278483 |
T |
|
| Q |
301 |
tgattattcaccttcccgctgttcccaccgcttgctacaatctttccatct |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35278484 |
tgattattcaccttcccgctgttcccaccgcttgctacaatctttccatct |
35278534 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 21 - 350
Target Start/End: Original strand, 35241413 - 35241751
Alignment:
| Q |
21 |
ggactaatgcagcagagtgagtagaatggggtatgaaaagaaagagactcaccgttttagcatcccagaattttattgttttatcagcagaagatgttgc |
120 |
Q |
| |
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|||||||||||| ||||||||||||| ||| ||||||||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||| |
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|
| T |
35241413 |
ggactaatgcagaagagtgagtagaaggggatatgaaaagaaagagactcactttttttgcatcccataattttactgttttatcagcagaagatgttgc |
35241512 |
T |
|
| Q |
121 |
aaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgagtcagtaacagaagtagaagtatccatgttgcaaatgaaa |
220 |
Q |
| |
|
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||| || ||| || |||| ||||||||| |
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|
| T |
35241513 |
aaatatagtcgatcctggttgaaatctaacttctaagatggtagatgaatgtgactttgacgtagtaacacaatcgccagtgtcgatgtaacaaatgaaa |
35241612 |
T |
|
| Q |
221 |
ggctgtataaaccacaatataaagataaatacatta---------attatgcagaccataaaaagatggaattggaaaatttatcgcattgattattcac |
311 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||| | || |||| |||| ||| | |||||| ||| |||||||||| ||||||||| |
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| T |
35241613 |
ggctgtttaaaccataatataaagataaatacattacgcagacacgtagtggagacagtaaacagacgaaattgggaaacttatcgcattaattattcac |
35241712 |
T |
|
| Q |
312 |
cttcccgctgttcccaccgcttgctacaatctttccatc |
350 |
Q |
| |
|
||||||||| ||||||| ||||||| ||| |||||||| |
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|
| T |
35241713 |
cttcccgcttttcccacaacttgctagaatatttccatc |
35241751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 58 - 253
Target Start/End: Original strand, 35283739 - 35283934
Alignment:
| Q |
58 |
aagaaagagactcaccgttttagcatcccagaattttattgttttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaag |
157 |
Q |
| |
|
||||||||||||||| |||| |||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| || || ||| |
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|
| T |
35283739 |
aagaaagagactcactttttttgcatcccataattttactgttttatcagcagaagatgttgcaaatatagttgatcctggttgaaatctcacgtcaaag |
35283838 |
T |
|
| Q |
158 |
atggtagatgaatgtgactctgagtcagtaacagaagtagaagtatccatgttgcaaatgaaaggctgtataaaccacaatataaagataaataca |
253 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||| | | | |||| ||||||||||||||||| ||| ||||||||||||| ||||||||| |
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|
| T |
35283839 |
atggtagacgaatgtgactctgacgtagtaacagaatcaagactttccacgttgcaaatgaaaggctatattaaccacaatataaccataaataca |
35283934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 25 - 242
Target Start/End: Original strand, 35253648 - 35253865
Alignment:
| Q |
25 |
taatgcagcagagtgagtagaatggggtatgaaaagaaagagactcaccgttttagcatcccagaattttattgttttatcagcagaagatgttgcaaat |
124 |
Q |
| |
|
|||||||| |||||||||||| | | | ||||||||||||||||||| | || |||||||| ||||||| |||||||||||||||||| |||||||| |
|
|
| T |
35253648 |
taatgcagatgagtgagtagaaggagatgtgaaaagaaagagactcacactgtttgcatcccataattttactgttttatcagcagaagaggttgcaaac |
35253747 |
T |
|
| Q |
125 |
atagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgagtcagtaacagaagtagaagtatccatgttgcaaatgaaaggct |
224 |
Q |
| |
|
| ||| |||||||||||||||||||| || ||||||||| | |||||||||| | | ||||||||| | ||| |||| || |||||||||||||| |
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|
| T |
35253748 |
acagttgatcctggttgaaatctaacttcgaagatggtatctaaatgtgactccaatgccgtaacagaaagaccagtttccaggtagcaaatgaaaggct |
35253847 |
T |
|
| Q |
225 |
gtataaaccacaatataa |
242 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
35253848 |
atataaaccacaatataa |
35253865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 35287244 - 35287400
Alignment:
| Q |
21 |
ggactaatgcagcagagtgagtagaatgggg-tatgaaaa-gaaagagactcaccgttttagcatcccagaattttattgttttatcagcagaagatgtt |
118 |
Q |
| |
|
|||||||||||| ||||||||||||| |||| | |||||| ||||||||||||| |||| |||||||| ||||||| ||||||||||||||| |||||| |
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|
| T |
35287244 |
ggactaatgcagaagagtgagtagaagggggatgtgaaaaagaaagagactcactttttttgcatcccataattttactgttttatcagcagaggatgtt |
35287343 |
T |
|
| Q |
119 |
gcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgac |
175 |
Q |
| |
|
||||||||||| || ||||||| |||||||||||| ||||| |||||| |||||||| |
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|
| T |
35287344 |
gcaaatatagttgaacctggtttaaatctaacatcgaagatagtagataaatgtgac |
35287400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 255
Target Start/End: Original strand, 35247078 - 35247258
Alignment:
| Q |
75 |
ttttagcatcccagaattttattgttttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtga |
174 |
Q |
| |
|
|||| |||||||| | ||||| |||| |||| ||||| |||||||||| |||| ||| ||||||||||||||| ||||||||| || | ||| ||| |
|
|
| T |
35247078 |
tttttgcatcccatagttttactgttccatcacgagaagttgttgcaaatctagttgattttggttgaaatctaacttctaagatgatatctaaatctga |
35247177 |
T |
|
| Q |
175 |
ctctgagtcagtaacagaagtagaagtatccatgttgcaaatgaaaggctgtataaaccacaatataaagataaatacatt |
255 |
Q |
| |
|
|||| | |||||||||||| | | | |||| || |||||||||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
35247178 |
ctctaatgcagtaacagaagcacgactttccacgtagcaaatgaaaggctatataaaccacaatatatggataaatacatt |
35247258 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 255
Target Start/End: Original strand, 35271596 - 35271760
Alignment:
| Q |
91 |
ttttattgttttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgagtcagtaaca |
190 |
Q |
| |
|
||||| |||| ||||||||||||| ||||||||||||| ||||||| | ||||||| || |||||||||| | | |||||| |||||| |||| | |
|
|
| T |
35271596 |
ttttactgttctatcagcagaagaagttgcaaatataggtgatcctgatcgaaatctgacttctaagatggcatctaaatgtgtctctgatgttgtaaaa |
35271695 |
T |
|
| Q |
191 |
gaagtagaagtatccatgttgcaaatgaaaggctgtataaaccacaatataaagataaatacatt |
255 |
Q |
| |
|
||| || ||| ||||||| |||||||||||||| | ||||||||||||||| ||| | |||||| |
|
|
| T |
35271696 |
gaattaccagtttccatgtagcaaatgaaaggctatttaaaccacaatataaggatcagtacatt |
35271760 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 82 - 176
Target Start/End: Original strand, 35238385 - 35238479
Alignment:
| Q |
82 |
atcccagaattttattgttttatcagcagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgact |
176 |
Q |
| |
|
|||||| ||||||| || |||||||| ||||| |||||||||||| | | |||||||||||||||||| ||| |||| | || ||||||||||| |
|
|
| T |
35238385 |
atcccataattttactgctttatcagaggaagaagttgcaaatatatttgttcctggttgaaatctaacttctgagataggagctgaatgtgact |
35238479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 108 - 231
Target Start/End: Original strand, 35275605 - 35275728
Alignment:
| Q |
108 |
cagaagatgttgcaaatatagtggatcctggttgaaatctaacatctaagatggtagatgaatgtgactctgagtcagtaacagaagtagaagtatccat |
207 |
Q |
| |
|
||||||| ||||||||||||| ||| ||||||||||||||| |||||||||| | ||||||| ||||| |||||||||| || | | ||||| |
|
|
| T |
35275605 |
cagaagaagttgcaaatataggtgatgctggttgaaatctaaattctaagatggcatctgaatgttactctattgaagtaacagaattaccaatttccat |
35275704 |
T |
|
| Q |
208 |
gttgcaaatgaaaggctgtataaa |
231 |
Q |
| |
|
|| |||||||||||||| |||||| |
|
|
| T |
35275705 |
gtagcaaatgaaaggctatataaa |
35275728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 277 - 315
Target Start/End: Original strand, 35247292 - 35247330
Alignment:
| Q |
277 |
atggaattggaaaatttatcgcattgattattcaccttc |
315 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
35247292 |
atggaagcggaaaatttatcgcattgattattcaccttc |
35247330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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