View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15709_low_4 (Length: 349)
Name: NF15709_low_4
Description: NF15709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15709_low_4 |
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| [»] chr1 (13 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 13)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 18 - 349
Target Start/End: Complemental strand, 9464683 - 9464352
Alignment:
| Q |
18 |
aaacttggcgaaggtggctatggttctgtttacaaaggacaattgctaggtggaaattaaatcaagagcaaatggacaggaattcatcaatgaagttgct |
117 |
Q |
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| T |
9464683 |
aaacttggcgaaggtggctatggttctgtttacaaaggacaattgctaggtggaaattaaatcaagagcaaatggacaggaattcatcaatgaagttgct |
9464584 |
T |
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| Q |
118 |
accattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagagcacttgtttatgagttcatgcctaacgatt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9464583 |
accattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagagcacttgtttatgagttcatgcctaacgatt |
9464484 |
T |
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| Q |
218 |
ctcttgaaaaacacattttctcaagagaaagaatgggttctttgagttctgagaaaatgtttgatatagctcttggtgtagcacgtggtattaaatatct |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||| |
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| T |
9464483 |
ctcttgaaaaacacattttctcaagagaaagaatgggttctttgagttctgagaaaatgtttgatatagctcttggtgtagcgcgtggtattgaatatct |
9464384 |
T |
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| Q |
318 |
acatagagggtgtgacatgagcattttgcatt |
349 |
Q |
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| T |
9464383 |
acatagagggtgtgacatgaggattttgcatt |
9464352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 79 - 349
Target Start/End: Complemental strand, 9489054 - 9488784
Alignment:
| Q |
79 |
tcaagagcaaatggacaggaattcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaa |
178 |
Q |
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| T |
9489054 |
tcaagagcaaatggacaggaattcatcaatgaagttgctacgattggaacgattcaccatgttaacgtggttcacctaattggcttttgtgttgagaaaa |
9488955 |
T |
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| Q |
179 |
caaaaagagcacttgtttatgagttcatgcctaacgattctcttgaaaaacacattttctcaagagaaagaatgggttctttgagttctgagaaaatgtt |
278 |
Q |
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| T |
9488954 |
caaaaagagcacttgtttatgagttcatgcctaatggttctcttgaaaagcacattttctcaagagaaagaatgggttctttgagttctgagaaaatgtt |
9488855 |
T |
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| Q |
279 |
tgatatagctcttggtgtagcacgtggtattaaatatctacatagagggtgtgacatgagcattttgcatt |
349 |
Q |
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| T |
9488854 |
tgatatagctcttggtgtagcccgtggtattgaatatctacatagagggtgtgacatgaggattttgcatt |
9488784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 11011372 - 11011306
Alignment:
| Q |
104 |
tcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgt |
170 |
Q |
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| T |
11011372 |
tcaatgaagttgctaccattggtaggattcaccatgttaatgtggtgcagctcattggtttttgtgt |
11011306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 9489141 - 9489100
Alignment:
| Q |
18 |
aaacttggcgaaggtggctatggttctgtttacaaaggacaa |
59 |
Q |
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| T |
9489141 |
aaacttggcgaaggtggctatggttctgtttacaaaggacaa |
9489100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 100 - 167
Target Start/End: Complemental strand, 10984000 - 10983933
Alignment:
| Q |
100 |
ttcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttg |
167 |
Q |
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| T |
10984000 |
ttcatcaatgaagttgtcaccattggtaggattcaccatgttaatgtggtacaccttattggtttttg |
10983933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 11008210 - 11008144
Alignment:
| Q |
104 |
tcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgt |
170 |
Q |
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| T |
11008210 |
tcaatgaagttgctaccattggtaggattcaccatgttaatgtggtacaactcattggtttctgtgt |
11008144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 104 - 170
Target Start/End: Complemental strand, 11033663 - 11033597
Alignment:
| Q |
104 |
tcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgt |
170 |
Q |
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| T |
11033663 |
tcaatgaagttgctaccattggtaggatccaccatgttaatgtggtacaactcattggtttttgtgt |
11033597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 9317923 - 9318052
Alignment:
| Q |
106 |
aatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagagcacttgtttatgagttca |
205 |
Q |
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| T |
9317923 |
aatgaagttgcaaccataggaagaatacaccatgcaaatgtggttagacttattggtttttgttttgagagatcaaaacgtgcacttgtttatgaattca |
9318022 |
T |
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| Q |
206 |
tgcctaacgattctcttgaaaaacacattt |
235 |
Q |
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| T |
9318023 |
tgcccaacggctctcttgataaatacattt |
9318052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 10903909 - 10903842
Alignment:
| Q |
103 |
atcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgt |
170 |
Q |
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| T |
10903909 |
atcaatgaagttgctaccatcggtaggattcaccacgttaatgtggtacaacttattggattttgtgt |
10903842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 104 - 170
Target Start/End: Original strand, 11004650 - 11004716
Alignment:
| Q |
104 |
tcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgt |
170 |
Q |
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| T |
11004650 |
tcaatgaagttactaccattggtaggattcaccatgtcaatgtggtacaactcattggattttgtgt |
11004716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 170
Target Start/End: Complemental strand, 10915072 - 10915005
Alignment:
| Q |
103 |
atcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgt |
170 |
Q |
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| T |
10915072 |
atcaatgaagttgtcaccatcggtaggattcaccatgttaatgtggcacaccttattggtttttgtgt |
10915005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 103 - 166
Target Start/End: Original strand, 11028234 - 11028297
Alignment:
| Q |
103 |
atcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggctttt |
166 |
Q |
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| T |
11028234 |
atcaatgaaattgctaccattggtaggattcaccatcttaatgtggtacaactcattggttttt |
11028297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 157 - 209
Target Start/End: Complemental strand, 8942443 - 8942391
Alignment:
| Q |
157 |
attggcttttgtgttgagaaaacaaaaagagcacttgtttatgagttcatgcc |
209 |
Q |
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| T |
8942443 |
attggattttgtgttgagggatcaaaaagagctcttgtttatgatttcatgcc |
8942391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 233
Target Start/End: Complemental strand, 27692921 - 27692776
Alignment:
| Q |
88 |
aatggacaggaattcatcaatgaagttgctaccattggaacgattcaccatgttaatgtggttcacctaattggcttttgtgttgagaaaacaaaaagag |
187 |
Q |
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| T |
27692921 |
aatggacaagacttcatcaatgaagttgcaaccattggaagaattcgtcatgtgaacgtggtgcaactggttggattctgtgctgaaagaacaaagcaag |
27692822 |
T |
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| Q |
188 |
cacttgtttatgagttcatgcctaacgattctcttgaaaaacacat |
233 |
Q |
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| T |
27692821 |
ctctggtttacgagttcatgcctaatggttctcttgataaacacat |
27692776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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