View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15709_low_5 (Length: 328)
Name: NF15709_low_5
Description: NF15709
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15709_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 7 - 324
Target Start/End: Complemental strand, 2183963 - 2183646
Alignment:
| Q |
7 |
gttatttccaaagcagaaaagaaaacgtgttttgtcctgggcaccccaagcaaatctcagccttggttttcataaattgattatgtttcttgtttgtttt |
106 |
Q |
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| T |
2183963 |
gttatttccaaagcagaaaagaaaacgtgttttgtcctgggcaccccaagcaaatctcagccttggttttcataaattgattatgtttcttgtttgtttt |
2183864 |
T |
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| Q |
107 |
gtgttaacgctccgggtcttggggaaggggactctagtaatccgaagttttgttggaaggaaagttaaatctgataagaattgttttcattaggaatcga |
206 |
Q |
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| T |
2183863 |
gtgttaacgctccgggtcttggggaaggggactctagtaatccgaagttttgttggaaggtaagttaaatctgataaaaaatgttttcattaggaatcga |
2183764 |
T |
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| Q |
207 |
attctggttctcccgaacaatttcactttgtaaagatcnnnnnnnnnnnnnnnnnctataacgtgttcattttaatttgctaataaaatgatgtgagaat |
306 |
Q |
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| T |
2183763 |
attctggttcttccgaacaatttcactttgtaaagatcttttttatttttattttctataaggtgttcattttaatttgctaataaaatgatgtgagaat |
2183664 |
T |
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| Q |
307 |
tataagtgatgatgatgt |
324 |
Q |
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| T |
2183663 |
tataagtgatgatgatgt |
2183646 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 8 - 190
Target Start/End: Complemental strand, 2151366 - 2151184
Alignment:
| Q |
8 |
ttatttccaaagcagaaaagaaaacgtgttttgtcctgggcaccccaagcaaatctcagccttggttttcataaattgattatgtttcttgtttgttttg |
107 |
Q |
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|||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||||||| |||||||| |||||| | ||| || ||||||||| |
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| T |
2151366 |
ttatttccaaagcagagaagaaaacgtgttttgtcctaggcaccccaagcaaatgtcagccttggctttcataagttgattgt-ttttttctttgttttg |
2151268 |
T |
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| Q |
108 |
tgttaacgctccgggt-cttggggaaggggactctagtaatccgaagttttgttggaaggaaagttaaatctgataagaattgt |
190 |
Q |
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| T |
2151267 |
tgttaacgctccgggtcctaaggcaaggggacccgagtaatccggagttttgttaggaggtaagttaaatatgacaataattgt |
2151184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 2175056 - 2174832
Alignment:
| Q |
7 |
gttatttccaaagcagaaa-agaaaacgtgttttgtcctgggcaccccaagcaaatctcagccttggttttcataaattgattatg-tttcttgtttgtt |
104 |
Q |
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||||||||||||||||| | | ||||||| ||||||||| ||||||| |||||||| ||||| |||| |||||||| ||||||||| ||| ||||||||| |
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| T |
2175056 |
gttatttccaaagcagagagaaaaaacgttttttgtcctaggcaccctaagcaaatgtcagctttggctttcataagttgattatgtttttttgtttgtt |
2174957 |
T |
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| Q |
105 |
ttgtgttaacgctcc--gggtcttggggaaggggactctagtaatccgaagttttgttggaaggaaagttaaatctgataagaattgttttcattaggaa |
202 |
Q |
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|||||||||| | || ||||| ||||||| |||| ||| ||||||| ||||||||| | ||| ||||| ||| ||| ||||||||||||| ||||||| |
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| T |
2174956 |
ttgtgttaacaccccgggggtccaggggaagaggaccctattaatccggagttttgttaggaggtaagtttaatatgacaagaattgttttc-ttaggaa |
2174858 |
T |
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| Q |
203 |
tcgaattctggttctcccgaacaatt |
228 |
Q |
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||||| || | |||||| |||||||| |
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| T |
2174857 |
tcgaactcagattctcctgaacaatt |
2174832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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