View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1570_high_13 (Length: 242)
Name: NF1570_high_13
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1570_high_13 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 63 - 224
Target Start/End: Original strand, 21122736 - 21122903
Alignment:
| Q |
63 |
taagagacttttaaattcaagaaggatttgttatactactattccctataatactct--aattgatatttattgcaccata----ccaatgtctttcaaa |
156 |
Q |
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| T |
21122736 |
taagagacttttaaattcaagaaggatttgttataccactattccctataatactctttaattgatatttattgcaccatatataccaatgtctttcaaa |
21122835 |
T |
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| Q |
157 |
ttacggagtcgctaaaaacatcaatttcagtatccaaattgaatgctcgagcacgtcacagcaaaatt |
224 |
Q |
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| T |
21122836 |
ttacggagtcgctaaaaacatcaatttcagtatccaaattgaatgctcgagcacgtcacagcaaaatt |
21122903 |
T |
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Target: chr4; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 21122563 - 21122624
Alignment:
| Q |
1 |
tcaaaaaccaaaataaattgaattcttttttgacatagttcctccatttctaaatataaata |
62 |
Q |
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| T |
21122563 |
tcaaaaaccaaaataaattgaattcttttttgacatactccctccatttctaattataaata |
21122624 |
T |
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