View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1570_high_7 (Length: 306)

Name: NF1570_high_7
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1570_high_7
NF1570_high_7
[»] chr7 (23 HSPs)
chr7 (132-298)||(6350348-6350514)
chr7 (118-263)||(33387490-33387637)
chr7 (126-256)||(7003524-7003653)
chr7 (126-256)||(7049395-7049524)
chr7 (187-263)||(13072043-13072119)
chr7 (167-263)||(21420055-21420151)
chr7 (144-263)||(32198872-32198991)
chr7 (130-194)||(36659070-36659134)
chr7 (127-203)||(44832729-44832805)
chr7 (127-175)||(49010640-49010688)
chr7 (143-210)||(23581250-23581317)
chr7 (128-210)||(23090231-23090313)
chr7 (127-209)||(28836988-28837070)
chr7 (155-263)||(8722525-8722633)
chr7 (126-185)||(8866941-8867000)
chr7 (136-210)||(31251965-31252039)
chr7 (174-220)||(48614137-48614183)
chr7 (161-210)||(553569-553618)
chr7 (188-265)||(8867640-8867717)
chr7 (127-208)||(33386831-33386911)
chr7 (188-265)||(33685745-33685822)
chr7 (160-256)||(32073529-32073625)
chr7 (126-174)||(33686461-33686509)
[»] chr5 (12 HSPs)
chr5 (126-263)||(23034862-23034998)
chr5 (126-263)||(30297107-30297242)
chr5 (126-194)||(15959146-15959214)
chr5 (129-204)||(8788726-8788801)
chr5 (144-202)||(20368293-20368351)
chr5 (127-263)||(8788018-8788156)
chr5 (126-185)||(12278065-12278124)
chr5 (143-202)||(20362932-20362991)
chr5 (126-194)||(10036806-10036873)
chr5 (126-194)||(26282518-26282585)
chr5 (126-194)||(36292821-36292888)
chr5 (126-194)||(39435596-39435663)
[»] chr4 (34 HSPs)
chr4 (143-265)||(20628655-20628777)
chr4 (127-263)||(20635493-20635629)
chr4 (141-263)||(2941386-2941508)
chr4 (141-263)||(3222232-3222354)
chr4 (143-241)||(5290651-5290749)
chr4 (142-204)||(33846480-33846542)
chr4 (126-256)||(26546456-26546588)
chr4 (126-194)||(13390648-13390716)
chr4 (160-256)||(31854155-31854250)
chr4 (126-185)||(28876524-28876583)
chr4 (160-210)||(13502487-13502537)
chr4 (126-263)||(9415797-9415932)
chr4 (126-194)||(34406484-34406551)
chr4 (126-194)||(44157522-44157590)
chr4 (188-263)||(3292805-3292880)
chr4 (126-185)||(30215956-30216015)
chr4 (126-185)||(33135654-33135713)
chr4 (124-183)||(56226192-56226251)
chr4 (127-185)||(42332983-42333041)
chr4 (126-180)||(50204302-50204356)
chr4 (167-263)||(15742705-15742799)
chr4 (170-263)||(29094332-29094425)
chr4 (188-265)||(42333685-42333762)
chr4 (214-263)||(56226267-56226316)
chr4 (126-194)||(1818554-1818621)
chr4 (191-263)||(9070467-9070538)
chr4 (126-194)||(13013088-13013155)
chr4 (126-194)||(25931609-25931676)
chr4 (126-194)||(26438479-26438546)
chr4 (126-194)||(26449622-26449690)
chr4 (126-194)||(36381549-36381616)
chr4 (126-194)||(43356804-43356871)
chr4 (126-194)||(47501673-47501740)
chr4 (187-263)||(48130161-48130237)
[»] chr8 (13 HSPs)
chr8 (127-263)||(33947257-33947393)
chr8 (126-194)||(3436131-3436199)
chr8 (126-256)||(9878118-9878247)
chr8 (144-203)||(15863523-15863582)
chr8 (126-175)||(32539693-32539742)
chr8 (170-263)||(33532980-33533073)
chr8 (127-263)||(33947628-33947763)
chr8 (127-226)||(40401350-40401449)
chr8 (126-263)||(29352261-29352395)
chr8 (126-194)||(24019591-24019658)
chr8 (126-194)||(28524098-28524165)
chr8 (167-251)||(33534788-33534872)
chr8 (126-194)||(39915414-39915481)
[»] chr3 (18 HSPs)
chr3 (144-208)||(19814987-19815052)
chr3 (117-209)||(10842491-10842583)
chr3 (136-263)||(5177104-5177231)
chr3 (128-259)||(38415649-38415783)
chr3 (126-184)||(5136191-5136249)
chr3 (127-185)||(11017480-11017538)
chr3 (152-241)||(8257706-8257795)
chr3 (148-263)||(219475-219590)
chr3 (129-263)||(16094283-16094418)
chr3 (160-210)||(218796-218846)
chr3 (128-194)||(27936081-27936147)
chr3 (126-175)||(29564382-29564431)
chr3 (144-185)||(35938141-35938182)
chr3 (130-210)||(485159-485239)
chr3 (126-194)||(19391046-19391113)
chr3 (126-194)||(22967644-22967711)
chr3 (126-194)||(34083322-34083389)
chr3 (126-194)||(39772690-39772757)
[»] chr2 (19 HSPs)
chr2 (143-263)||(21556283-21556403)
chr2 (145-228)||(18829074-18829157)
chr2 (127-210)||(37621905-37621988)
chr2 (126-232)||(15441489-15441595)
chr2 (161-263)||(18829830-18829932)
chr2 (118-263)||(17373669-17373814)
chr2 (126-186)||(7071742-7071802)
chr2 (126-194)||(17444236-17444303)
chr2 (126-194)||(26161903-26161970)
chr2 (188-259)||(26238130-26238201)
chr2 (144-203)||(26591296-26591355)
chr2 (126-168)||(12756065-12756107)
chr2 (126-263)||(15512385-15512522)
chr2 (127-213)||(30325429-30325521)
chr2 (160-233)||(40654140-40654213)
chr2 (126-194)||(771632-771700)
chr2 (126-194)||(6403004-6403071)
chr2 (126-194)||(18982443-18982510)
chr2 (126-194)||(41250833-41250900)
[»] chr1 (9 HSPs)
chr1 (118-242)||(17458081-17458204)
chr1 (126-194)||(17446191-17446259)
chr1 (126-194)||(41971457-41971525)
chr1 (127-194)||(15209490-15209557)
chr1 (128-194)||(3829883-3829949)
chr1 (144-263)||(17745041-17745162)
chr1 (147-262)||(9901855-9901968)
chr1 (141-263)||(3829166-3829291)
chr1 (216-262)||(33658895-33658941)
[»] scaffold0134 (1 HSPs)
scaffold0134 (136-263)||(18213-18340)
[»] chr6 (5 HSPs)
chr6 (117-232)||(16793782-16793897)
chr6 (128-263)||(23217804-23217939)
chr6 (163-241)||(28932958-28933036)
chr6 (188-263)||(28996913-28996988)
chr6 (126-194)||(399517-399584)
[»] scaffold0154 (1 HSPs)
scaffold0154 (126-194)||(32113-32181)
[»] scaffold0002 (1 HSPs)
scaffold0002 (126-194)||(479657-479724)


Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 132 - 298
Target Start/End: Complemental strand, 6350514 - 6350348
Alignment:
Q  132 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350514 ttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttc 6350415  T
Q  232 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtccatttcttatc 298  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6350414 gtgtatattatagagtcaatttcaacaattaatcgaatttttattcacttcttgtccatttcttatc 6350348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 33387490 - 33387637
Alignment:
Q  118 tctagttcgcttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagag 215  Q
    ||||| ||||| |||||||| || | ||||||| ||||||| ||||   | || |||||||||||||| | ||| ||||||||||||| |||||| ||      
T  33387490 tctaggtcgctcttttggacgttgcatatattaaagggtcaaaaatgggaaaaaaatctcaaattacagggttataatatgtgttttttattttatagga 33387589  T
Q  216 tcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||| ||||||| ||||||||| |  ||||||||  ||||||||    
T  33387590 tcattgtttagacttcatgtatattacaaggtcaattttgacaattaa 33387637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 7003524 - 7003653
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 224  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7003524 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7003621  T
Q  225 agacttcgtgtatattatagagtcaatttcaa 256  Q
    |||||||  |||||||| |  |||||||||||    
T  7003622 agacttcacgtatattacatggtcaatttcaa 7003653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 7049395 - 7049524
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 224  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || ||||||||| | ||||||| |||| |||||  ||| || |||| | |||    
T  7049395 gcttttttggacttcgcgtatattacagggttataaataataaaaatatcgaattacatggtcagaatatatgttatttaa--ttatagggtcaattttc 7049492  T
Q  225 agacttcgtgtatattatagagtcaatttcaa 256  Q
    |||||||  |||||||| |  |||||||||||    
T  7049493 agacttcacgtatattacatggtcaatttcaa 7049524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 13072119 - 13072043
Alignment:
Q  187 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||||||||||||||||| ||||||  | |||||| |||||||||||  ||||||| || ||||||||||| ||||||    
T  13072119 ttagaatatgtgttttttattttacggggtcatttttcagacttcgcatatattacagggtcaatttcaataattaa 13072043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 167 - 263
Target Start/End: Complemental strand, 21420151 - 21420055
Alignment:
Q  167 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||| |||||||||| | ||||||| | |||||||  ||||| ||| ||||| ||||||||||  |||||||| |  ||||||||||||||||||    
T  21420151 aagaatatcaaattacagggttagaatctatgtttttttttttatagaatcatttttcagacttcacgtatattacaaggtcaatttcaacaattaa 21420055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 144 - 263
Target Start/End: Complemental strand, 32198991 - 32198872
Alignment:
Q  144 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagtcattgttcagacttcgtgtatattat 242  Q
    ||||||| |||| || |||||| ||||||||||||||| | | |||||||||||||||||| ||||| |||| ||||| ||||||||  | ||||||||     
T  32198991 tatattagagggccaaaaataagaagaatctcaaattatagggttagaatatgtgtttttatttttacaaga-tcatttttcagactatgcgtatattac 32198893  T
Q  243 agagtcaatttcaacaattaa 263  Q
    |  |||||||| || ||||||    
T  32198892 aaggtcaatttaaataattaa 32198872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 130 - 194
Target Start/End: Original strand, 36659070 - 36659134
Alignment:
Q  130 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||  ||||||||| ||||| ||||||||||| |||||||||||||||| | ||||||    
T  36659070 ttttggacttcgcgtatattacagggttataaataataaaaatctcaaattacatggtcagaata 36659134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 203
Target Start/End: Original strand, 44832729 - 44832805
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 203  Q
    ||||||||||||| |  ||  ||| ||||||| |||||||||||||||||||||||| | ||| |||||||||||||    
T  44832729 cttttttggacttcaactaatttacagggtcaaaaataataagaatctcaaattacagggttaaaatatgtgttttt 44832805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 49010640 - 49010688
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctc 175  Q
    ||||||||||||| |||||||||| ||||||||||||||||| ||||||    
T  49010640 cttttttggacttcacgtatattacagggtcataaataataaaaatctc 49010688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 143 - 210
Target Start/End: Complemental strand, 23581317 - 23581250
Alignment:
Q  143 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 210  Q
    |||||||||||||| | || ||| |||| |||||||||||| | ||||||||||| ||||||||||||    
T  23581317 gtatattatagggttaaaactaaaaagattctcaaattacagggttagaatatgtatttttaatttta 23581250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 210
Target Start/End: Original strand, 23090231 - 23090313
Alignment:
Q  128 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 210  Q
    ||||||||||||||  ||||||| ||||||  ||||||||| ||| | |||||||| | ||| ||||||||||||| ||||||    
T  23090231 ttttttggactttaactatattaaagggtcgaaaataataaaaatattaaattacaagattataatatgtgttttttatttta 23090313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 127 - 209
Target Start/End: Complemental strand, 28837070 - 28836988
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 209  Q
    ||||| ||||||| || ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| || ||||||| ||||    
T  28837070 cttttctggacttcacatatattacagggtcataaataataagaatatcaaataacaaggttaaaatttgcgtttttattttt 28836988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 155 - 263
Target Start/End: Complemental strand, 8722633 - 8722525
Alignment:
Q  155 gtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttc 254  Q
    ||||||||||||||||||||| ||||||| | | | ||||| ||||||| |||||| | |||||||  ||||||||    ||||||| || | |||||||    
T  8722633 gtcataaataataagaatctcgaattacagggtcataatatatgttttttattttacaaagtcatttatcagactttacatatattacagggacaatttc 8722534  T
Q  255 aacaattaa 263  Q
    || ||||||    
T  8722533 aataattaa 8722525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 8867000 - 8866941
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 185  Q
    |||||||||||||| |||||||||| | ||| ||||||||||| ||| || |||||||||    
T  8867000 gcttttttggacttcacgtatattacaaggttataaataataaaaatttcgaattacatg 8866941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 210
Target Start/End: Complemental strand, 31252039 - 31251965
Alignment:
Q  136 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 210  Q
    ||||| ||||||||| | ||| | | ||||||||||| ||||| || ||| ||||||||||||||||| ||||||    
T  31252039 actttgcgtatattacaaggttaaagataataagaatatcaaaatatatggttagaatatgtgttttttatttta 31251965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 48614137 - 48614183
Alignment:
Q  174 tcaaattacatgtttagaatatgtgtttttaattttaaagagtcatt 220  Q
    ||||||||||| |||| |||||||||||||| ||||| |||||||||    
T  48614137 tcaaattacatatttaaaatatgtgtttttatttttacagagtcatt 48614183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 553569 - 553618
Alignment:
Q  161 aataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 210  Q
    ||||| || ||| ||||||||||||  |||||||||||||||||||||||    
T  553569 aataagaataatttcaaattacatgactagaatatgtgtttttaatttta 553618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 8867640 - 8867717
Alignment:
Q  188 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 265  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   ||||||||||| |||||||| |||||||||||    
T  8867640 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattatagggtcaatttgaacaattaatc 8867717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 208
Target Start/End: Complemental strand, 33386911 - 33386831
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattt 208  Q
    ||||||||||||   | ||||||| ||||||| ||| || ||||||||||||||||||| ||| ||||| ||||||| ||||    
T  33386911 cttttttggactacgcatatattagagggtca-aaacaaaaagaatctcaaattacatgattaaaatatatgttttttattt 33386831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Complemental strand, 33685822 - 33685745
Alignment:
Q  188 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 265  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||| || |||||||| |||||||||||    
T  33685822 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattacagggtcaatttgaacaattaatc 33685745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 32073529 - 32073625
Alignment:
Q  160 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 256  Q
    |||||||||||||  ||||||||||| ||| |||||||| | || |||||| |   ||||| |||||||||||  ||||||| |  |||||||||||    
T  32073529 aaataataagaattgcaaattacatgattaaaatatgtgctatttattttacatgatcatttttcagacttcgcatatattacaaggtcaatttcaa 32073625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 174
Target Start/End: Original strand, 33686461 - 33686509
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatct 174  Q
    ||||||| |||||| |||||||||| ||||| ||||||||||| |||||    
T  33686461 gctttttaggacttcacgtatattacagggttataaataataaaaatct 33686509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 70; Significance: 1e-31; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 23034862 - 23034998
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 225  Q
    |||||||||||||| |||||||||||||||||||||||| ||| ||| || ||||||||| | | ||||||| ||||| |||||| ||||||||| ||||    
T  23034862 gcttttttggacttcacgtatattatagggtcataaatagtaaaaatatcgaattacatggtcataatatgtattttt-attttacagagtcatttttca 23034960  T
Q  226 gacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||||||||||| ||  |||||||||| ||||||    
T  23034961 gacttcgtgtatattacaggatcaatttcaataattaa 23034998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 126 - 263
Target Start/End: Complemental strand, 30297242 - 30297107
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 225  Q
    ||||||||||||||||||||||| | | | |||||||||||||||||||| ||||||| | |||||||||||| |||| |||| | |  |||||| || |    
T  30297242 gcttttttggactttacgtatatcacatgatcataaataataagaatctcgaattacagggttagaatatgtgatttttatttaacaacgtcatt-ttga 30297144  T
Q  226 gacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||| ||||||| |  ||||||||||| ||||||    
T  30297143 gacttcgtttatattaca-tgtcaatttcaataattaa 30297107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 15959214 - 15959146
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||||| ||||||    
T  15959214 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacatgttcagaata 15959146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 129 - 204
Target Start/End: Original strand, 8788726 - 8788801
Alignment:
Q  129 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 204  Q
    |||||||||||||  |||||||||| || | ||||||||||||||||||||||||||  || ||||||||||||||    
T  8788726 tttttggactttaactatattatagagtaaaaaataataagaatctcaaattacatggctaaaatatgtgttttta 8788801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 20368351 - 20368293
Alignment:
Q  144 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 202  Q
    ||||||||| ||||| |||||| ||||||||||||||||| ||||| ||||||| ||||    
T  20368351 tatattatatggtcaaaaataagaagaatctcaaattacaagtttaaaatatgtctttt 20368293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 8788156 - 8788018
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaata--ataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttc 224  Q
    |||||||||||   |||||||||||||||||| |||||  | || ||||||||||||||   ||||||||| ||||||| |||||| || || ||| |||    
T  8788156 cttttttggaccacacgtatattatagggtcaaaaataagaaaaaaatctcaaattacaaagttagaatatttgttttttattttacagggttatttttc 8788057  T
Q  225 agacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||   |||  ||| ||| || |||||||| |||||||||    
T  8788056 aggtatcgcatattttacagtgtcaatttaaacaattaa 8788018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 12278124 - 12278065
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 185  Q
    |||||||||||||| | |||||||| ||||| ||||||||||| ||| || |||||||||    
T  12278124 gcttttttggacttcatgtatattacagggttataaataataaaaatttcgaattacatg 12278065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 20362991 - 20362932
Alignment:
Q  143 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttt 202  Q
    |||||||||| ||||| |||||| ||||||||||||||||| | ||| ||||||| ||||    
T  20362991 gtatattatatggtcaaaaataagaagaatctcaaattacaaggttaaaatatgtctttt 20362932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 10036806 - 10036873
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  10036806 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 10036873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 26282585 - 26282518
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26282585 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 26282518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 36292888 - 36292821
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  36292888 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 36292821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 39435596 - 39435663
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    |||||||||||||| |||||| ||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39435596 gcttttttggacttcacgtatcttacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39435663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 143 - 265
Target Start/End: Complemental strand, 20628777 - 20628655
Alignment:
Q  143 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 242  Q
    |||||||| ||||| | ||||||||||||| |||||||||| | ||  ||||||||||||| |||||| | ||||||| ||||||||||  ||||||||     
T  20628777 gtatattacagggtaaaaaataataagaatatcaaattacaaggttttaatatgtgttttttattttacatagtcatttttcagacttcccgtatattac 20628678  T
Q  243 agagtcaatttcaacaattaatc 265  Q
    || ||||||||||||||| ||||    
T  20628677 agggtcaatttcaacaatcaatc 20628655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 20635629 - 20635493
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 226  Q
    ||||||||||||| | ||| |||||||||| | ||||||| ||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| || ||    
T  20635629 cttttttggacttaatgtacattatagggtaaaaaataatgagaatatcaaattacaaggttaaaatatgtgttttttattttacaggttcatttttgag 20635530  T
Q  227 acttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    | ||| | ||||||  |  |||||||| |||||||||    
T  20635529 atttcatatatattgcaaggtcaatttaaacaattaa 20635493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 2941386 - 2941508
Alignment:
Q  141 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 240  Q
    |||| ||||||||||||| |||||  |||||| ||||||||||   ||| |||||||||||||| ||||| || |||||| |||||||  ||  ||||||    
T  2941386 acgtgtattatagggtcaaaaatagaaagaatatcaaattacagagttaaaatatgtgtttttatttttacagggtcatttttcagaccacgcctatatt 2941485  T
Q  241 atagagtcaatttcaacaattaa 263  Q
    | |   |||||||||||||||||    
T  2941486 acaagatcaatttcaacaattaa 2941508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 263
Target Start/End: Original strand, 3222232 - 3222354
Alignment:
Q  141 acgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatt 240  Q
    |||||||||||||||||| |||||| ||||||||||||| |||   ||||||||||| ||||| |||||| ||  | ||| |||| || | |||||| ||    
T  3222232 acgtatattatagggtcaaaaataagaagaatctcaaatgacagagttagaatatgtatttttcattttacaggattatttttcaaacattgtgtatttt 3222331  T
Q  241 atagagtcaatttcaacaattaa 263  Q
    |  | |||||||| |||||||||    
T  3222332 acggggtcaatttaaacaattaa 3222354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 241
Target Start/End: Complemental strand, 5290749 - 5290651
Alignment:
Q  143 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 241  Q
    |||||||||| ||| | |||||| ||||||||||||||||| ||||| ||||||| |||||| ||||| || || ||| || ||||||| ||| |||||    
T  5290749 gtatattatatggtaaaaaataagaagaatctcaaattacaagtttaaaatatgtctttttatttttatagcgttattttttagacttcatgtgtatta 5290651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 142 - 204
Target Start/End: Original strand, 33846480 - 33846542
Alignment:
Q  142 cgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttta 204  Q
    ||||||||| ||||||| |||||| |||||| |||||||||||| ||| ||||||||||||||    
T  33846480 cgtatattaaagggtcaaaaataagaagaatatcaaattacatggttataatatgtgttttta 33846542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 126 - 256
Target Start/End: Complemental strand, 26546588 - 26546456
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatg--tgtttttaattttaaagagtcattgtt 223  Q
    |||||||||||||| |  ||||||| ||||||  ||||||||||||||||||||||||   ||||||| ||  | ||||| |||||| ||||| | | ||    
T  26546588 gcttttttggacttcaactatattacagggtccaaaataataagaatctcaaattacagagttagaatgtgttttttttttattttacagagttaatttt 26546489  T
Q  224 cagacttcgtgtatattatagagtcaatttcaa 256  Q
    |||||||||  ||||||| ||  ||||||||||    
T  26546488 cagacttcgcatatattacaggatcaatttcaa 26546456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 13390716 - 13390648
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  13390716 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 13390648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 160 - 256
Target Start/End: Original strand, 31854155 - 31854250
Alignment:
Q  160 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaa 256  Q
    ||||||||||||| |||||||||| | ||| ||||| ||||||| |||||| || |||||| ||||||||||   ||||||| || |||||||||||    
T  31854155 aaataataagaatatcaaattacaggattataatatatgttttttattttacagggtcatttttcagacttcacatatattacag-gtcaatttcaa 31854250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 28876583 - 28876524
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 185  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||||||||    
T  28876583 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatg 28876524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 160 - 210
Target Start/End: Original strand, 13502487 - 13502537
Alignment:
Q  160 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 210  Q
    |||||| ||||||||||||||| ||||||| ||||| ||||||||||||||    
T  13502487 aaataagaagaatctcaaattatatgtttaaaatatatgtttttaatttta 13502537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 9415797 - 9415932
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 225  Q
    |||||||||||||| |  |||| || ||||||| ||| ||| |||||||||||||||| | ||| |||||||||| || | ||||  | || ||| ||||    
T  9415797 gcttttttggacttcaactataatacagggtcaaaaagaatcagaatctcaaattacagggttataatatgtgttattta-tttagtgggt-atttttca 9415894  T
Q  226 gacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||  ||||||| || ||||||||||| ||||||    
T  9415895 gacttcgcatatattacagggtcaatttcaataattaa 9415932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 34406551 - 34406484
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||| ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34406551 gcttttttggactttgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34406484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 44157522 - 44157590
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| |||| |||| | ||||||    
T  44157522 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattgcatggtcagaata 44157590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 3292805 - 3292880
Alignment:
Q  188 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  3292805 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 3292880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 30216015 - 30215956
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 185  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  30216015 gcttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 30215956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 185
Target Start/End: Complemental strand, 33135713 - 33135654
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 185  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| |||||||||    
T  33135713 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatg 33135654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 56226192 - 56226251
Alignment:
Q  124 tcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattaca 183  Q
    ||||||||||||||||  ||||||||||  ||||  ||||||||||||| ||||||||||    
T  56226192 tcgcttttttggacttctcgtatattatttggtctcaaataataagaatatcaaattaca 56226251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 42333041 - 42332983
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 185  Q
    |||||||||||||  ||||||||| ||||| ||||||||||| ||| || |||||||||    
T  42333041 cttttttggacttcgcgtatattacagggttataaataataaaaatttcgaattacatg 42332983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 180
Target Start/End: Complemental strand, 50204356 - 50204302
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaatt 180  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||    
T  50204356 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaatt 50204302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 167 - 263
Target Start/End: Original strand, 15742705 - 15742799
Alignment:
Q  167 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||||||||||||  ||| | |||||||||||||||||| ||||| |  |||| | ||||||||  | |||||||| ||| ||||||| |||||||||    
T  15742705 aagaatctcaaa--acagggttagaatatgtgtttttatttttacaaggtcagttttcagactatgcgtatattacagaatcaatttgaacaattaa 15742799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 263
Target Start/End: Complemental strand, 29094425 - 29094332
Alignment:
Q  170 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||||||||| | ||||||||||| ||||| |||||| || || ||| ||||||| | | |||| ||| || |||| ||| |||||||||    
T  29094425 aatctcaaattacagggttagaatatgtattttttattttacagggttatttttcagacattgcgtattttacagggtcattttaaacaattaa 29094332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 265
Target Start/End: Original strand, 42333685 - 42333762
Alignment:
Q  188 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaatc 265  Q
    |||||||| ||||||  ||||| ||| |||||| ||||||| |   |||||||| ||||||||||| |||||||||||    
T  42333685 tagaatatatgttttgtatttttaagggtcatttttcagacataaggtatattacagagtcaatttgaacaattaatc 42333762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 263
Target Start/End: Original strand, 56226267 - 56226316
Alignment:
Q  214 agtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||||||| || ||||||||||||||||| | ||| |||||||||||||||    
T  56226267 agtcattttttagacttcgtgtatattacaaagttaatttcaacaattaa 56226316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 1818554 - 1818621
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  1818554 gcttttttggacttctcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 1818621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 191 - 263
Target Start/End: Complemental strand, 9070538 - 9070467
Alignment:
Q  191 aatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||||||||  |||||||| |||||| ||||||||||| |||||||| |  |||||||| |||| ||||    
T  9070538 aatatgtgtttttctttttaaag-gtcatttttcagacttcgcgtatattacatggtcaatttgaacagttaa 9070467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 13013088 - 13013155
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  13013088 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 13013155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 25931609 - 25931676
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  25931609 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 25931676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 26438546 - 26438479
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26438546 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 26438479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 26449622 - 26449690
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||| ||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  26449622 gcttttttgaacttcgcgtatattacaggattataaataataaaaatctcgaattacatggtcagaata 26449690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 36381616 - 36381549
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  36381616 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 36381549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 43356804 - 43356871
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  43356804 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 43356871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 47501673 - 47501740
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  47501673 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 47501740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 187 - 263
Target Start/End: Complemental strand, 48130237 - 48130161
Alignment:
Q  187 ttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||||||||  |||||||| |||||||||    
T  48130237 ttagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatatggtcaatttgaacaattaa 48130161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 127 - 263
Target Start/End: Complemental strand, 33947393 - 33947257
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 226  Q
    ||||||||||||| || ||||||||||||||| | |||  ||||||||||||||||| | ||| |||| ||| ||||| || || ||||||||| |||||    
T  33947393 cttttttggacttcacatatattatagggtcaaacatatgaagaatctcaaattacaaggttaaaatacgtgcttttatttgtacagagtcatttttcag 33947294  T
Q  227 acttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||||||  ||||||| |  |||||||| |||||||||    
T  33947293 acttcgcctatattacatggtcaatttgaacaattaa 33947257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 3436131 - 3436199
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||| ||||||||| | ||| ||||||||||| |||||| ||||||||||||| ||||    
T  3436131 gcttttttggactttgcgtatattacaaggttataaataataaaaatctcgaattacatgtttaaaata 3436199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 256
Target Start/End: Original strand, 9878118 - 9878247
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt-tttaattttaaagagtcattgttc 224  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||  |||| |||||  ||| || |||| | |||    
T  9878118 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaatacatgttatttaa--ttacagggtcaattttc 9878215  T
Q  225 agacttcgtgtatattatagagtcaatttcaa 256  Q
    ||||||| ||||||||| |  |||||||||||    
T  9878216 agacttcatgtatattacatggtcaatttcaa 9878247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 144 - 203
Target Start/End: Original strand, 15863523 - 15863582
Alignment:
Q  144 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 203  Q
    ||||||||||||||| |||||| ||| ||||||||||||| |||| |||||||| |||||    
T  15863523 tatattatagggtcaaaaataagaagtatctcaaattacaagtttggaatatgtattttt 15863582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 32539742 - 32539693
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctc 175  Q
    |||||||||||||| |||||| ||| ||||| ||||||||||||||||||    
T  32539742 gcttttttggacttcacgtattttacagggtgataaataataagaatctc 32539693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 263
Target Start/End: Original strand, 33532980 - 33533073
Alignment:
Q  170 aatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||||||||| | ||| ||| | || ||||| ||||| | ||||||| || |||||||||||| |||||||  ||||||| |||||||||    
T  33532980 aatctcaaattacaaggttataatttatgattttatttttacatagtcattttttagacttcgtgtacattataggatcaatttgaacaattaa 33533073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 263
Target Start/End: Original strand, 33947628 - 33947763
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 226  Q
    |||||||||||||  |||| |||| ||||||| |||||| | |||| |||||||||| | ||| ||||| |||||||| ||||| |  |||||| |||||    
T  33947628 cttttttggacttagcgtacattagagggtcaaaaataagatgaatttcaaattacagggttaaaatatatgtttttatttttacatggtcatt-ttcag 33947726  T
Q  227 acttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||||   |||||||| |  |||||||| || ||||||    
T  33947727 actttacgtatattacattgtcaatttgaataattaa 33947763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 127 - 226
Target Start/End: Original strand, 40401350 - 40401449
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcag 226  Q
    ||||||||||||   | ||||||||||||| | |||||| |||||| |||| ||||| | |||||||||| ||| || ||||| ||| |||||| |||||    
T  40401350 cttttttggactacgcatatattatagggttaaaaataagaagaatatcaatttacaagattagaatatgcgttatttattttcaagtgtcatttttcag 40401449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 29352261 - 29352395
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 225  Q
    ||||||||| |||| |  ||||||| ||| | | ||||||||| | |||||||||||| | |||| |||||||||||| ||||| | | |||||| ||||    
T  29352261 gcttttttgtacttcaactatattacaggataaaaaataataaaagtctcaaattacagggttaggatatgtgttttttatttt-acgggtcatttttca 29352359  T
Q  226 gacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||   ||  ||||||| |||||||||||||| ||||||    
T  29352360 ga--gcgcatatattacagagtcaatttcaataattaa 29352395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 24019658 - 24019591
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  24019658 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 24019591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 28524098 - 28524165
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  28524098 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 28524165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 167 - 251
Target Start/End: Original strand, 33534788 - 33534872
Alignment:
Q  167 aagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaat 251  Q
    ||||||||||||||| |   ||| ||| |||  ||||| ||||| | ||||||| || |||||||||||||||||||| ||||||    
T  33534788 aagaatctcaaattataaagttacaatttgttattttatttttacatagtcattatttagacttcgtgtatattatagggtcaat 33534872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 39915414 - 39915481
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39915414 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39915481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 18)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 19814987 - 19815052
Alignment:
Q  144 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattt 208  Q
    ||||||||||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  19814987 tatattatagggtcaaaaataacaagaatctcaaattacatggttagaatatgtggtttttaattt 19815052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 117 - 209
Target Start/End: Original strand, 10842491 - 10842583
Alignment:
Q  117 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttt 209  Q
    |||||| |||| ||| ||||| | || ||||||| |||||||||||||  |||||| |||||||||||| |||||||||||||||||| ||||    
T  10842491 atctagatcgcctttctggacatcacatatattaaagggtcataaataggaagaatatcaaattacatggttagaatatgtgtttttattttt 10842583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 136 - 263
Target Start/End: Complemental strand, 5177231 - 5177104
Alignment:
Q  136 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 235  Q
    |||| |||||||||| | ||| | |||| | || ||||||||||||||||  |  ||||||||||||| |||||| ||| ||||| |||||||||| |||    
T  5177231 acttcacgtatattaaatggtaaaaaattagaaaaatctcaaattacatgggtgaaatatgtgttttttattttacagattcatttttcagacttcatgt 5177132  T
Q  236 atattatagagtcaatttcaacaattaa 263  Q
     ||||| |  |||||||| |||||||||    
T  5177131 ttattacatggtcaatttgaacaattaa 5177104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 259
Target Start/End: Original strand, 38415649 - 38415783
Alignment:
Q  128 ttttttggactttacgtatattatagggtcataaa-taataagaatctcaaattacatgtttagaatatgtg--tttttaattttaaagagtcattgttc 224  Q
    |||||||||||   ||||||||||||||| | ||| ||| ||||||||||||||||| | ||| ||||||||  ||||| |||||| |  |||||| |||    
T  38415649 ttttttggactacgcgtatattatagggtaaaaaaataagaagaatctcaaattacagggttaaaatatgtgttttttttattttacaatgtcatttttc 38415748  T
Q  225 agacttcgtgtatattatagagtcaatttcaacaa 259  Q
    |||| || ||||||||| || |||||||| |||||    
T  38415749 agacatcatgtatattacagcgtcaatttgaacaa 38415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 184
Target Start/End: Original strand, 5136191 - 5136249
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacat 184  Q
    ||||||||||||||  ||||||||||||||| ||||||||||| |||||| ||||||||    
T  5136191 gcttttttggacttcgcgtatattatagggttataaataataaaaatctcgaattacat 5136249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 127 - 185
Target Start/End: Complemental strand, 11017538 - 11017480
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatg 185  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||| || |||||||||    
T  11017538 cttttttggacttcacgtatattatagggttataaataataaaaatttcgaattacatg 11017480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 241
Target Start/End: Original strand, 8257706 - 8257795
Alignment:
Q  152 agggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 241  Q
    |||||||||||||||||||||||  ||||||||| | | ||||||||||||| |||||| || |||||| || | |||||| | ||||||    
T  8257706 agggtcataaataataagaatcttgaattacatggtcaaaatatgtgttttttattttacagggtcattttttaaacttcgcgaatatta 8257795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 263
Target Start/End: Original strand, 219475 - 219590
Alignment:
Q  148 ttatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagt 247  Q
    |||||| |||| |||||| |||||| ||||||| || | ||| ||||| | ||||| |||||| |  |||||| ||||||| ||  |||| ||| |||||    
T  219475 ttatagagtcaaaaataagaagaatttcaaattgcaaggttaaaatatctattttttattttacaatgtcatttttcagacatcacgtattttacagagt 219574  T
Q  248 caatttcaacaattaa 263  Q
    |||||| |||||||||    
T  219575 caatttaaacaattaa 219590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 263
Target Start/End: Complemental strand, 16094418 - 16094283
Alignment:
Q  129 tttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgt-gtttttaattttaaagagtcattgttcaga 227  Q
    ||||||||||| |  ||||||| ||||  | |||| ||||| ||||||||||||| | ||| |||||||  ||||| |||||| || |||| | ||||||    
T  16094418 tttttggacttcaactatattacagggcaaaaaattataaggatctcaaattacagggttataatatgtatttttttattttacagggtcaattttcaga 16094319  T
Q  228 cttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||  |||||||  | ||||||||||| ||||||    
T  16094318 cttcgcatatattactgggtcaatttcaataattaa 16094283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 210
Target Start/End: Complemental strand, 218846 - 218796
Alignment:
Q  160 aaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 210  Q
    |||||||||||||| ||||||||| | ||| ||||||||||||| ||||||    
T  218846 aaataataagaatcccaaattacagggttataatatgtgttttttatttta 218796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 27936081 - 27936147
Alignment:
Q  128 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||  ||||||||| ||||| |||||||||||  ||||||||| ||||| | ||||||    
T  27936081 ttttttggacttcgcgtatattacagggttataaataataaatatctcaaatcacatggtcagaata 27936147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 175
Target Start/End: Complemental strand, 29564431 - 29564382
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctc 175  Q
    |||||||||||||| |||||||| | | ||||||||||||||| ||||||    
T  29564431 gcttttttggacttcacgtatatgacatggtcataaataataataatctc 29564382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 185
Target Start/End: Original strand, 35938141 - 35938182
Alignment:
Q  144 tatattatagggtcataaataataagaatctcaaattacatg 185  Q
    |||||||| |||||| ||||||||||||||| ||||||||||    
T  35938141 tatattatggggtcaaaaataataagaatcttaaattacatg 35938182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 130 - 210
Target Start/End: Complemental strand, 485239 - 485159
Alignment:
Q  130 ttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 210  Q
    |||||||| | |||||||||| ||||| | |||||  |||||||||||||||||  | |||||||| ||| |||| |||||    
T  485239 ttttggacatcacgtatattagagggtaaaaaatagaaagaatctcaaattacagatgtagaatatatgtctttattttta 485159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 19391046 - 19391113
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  19391046 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 19391113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 22967711 - 22967644
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  22967711 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 22967644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 34083389 - 34083322
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  34083389 gcttttttggacttctcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 34083322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 39772690 - 39772757
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  39772690 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 39772757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 263
Target Start/End: Complemental strand, 21556403 - 21556283
Alignment:
Q  143 gtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattat 242  Q
    |||||||||||||||| |||| | ||||||||||||||||||  ||| ||||||| | ||| |||||| |  |||||| ||||||| |||||||| |||     
T  21556403 gtatattatagggtcaaaaattagaagaatctcaaattacatagttataatatgtatattttattttacaaggtcatttttcagacatcgtgtattttaa 21556304  T
Q  243 agagtcaatttcaacaattaa 263  Q
    |  |||| ||| |||||||||    
T  21556303 atggtcagtttaaacaattaa 21556283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 145 - 228
Target Start/End: Complemental strand, 18829157 - 18829074
Alignment:
Q  145 atattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagac 228  Q
    |||||||||||||| ||||||||||||||||||||||   | ||||||||||| ||||| |||||| ||  ||||| |||||||    
T  18829157 atattatagggtcaaaaataataagaatctcaaattatgaggttagaatatgtattttttattttacaggatcatttttcagac 18829074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 127 - 210
Target Start/End: Original strand, 37621905 - 37621988
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta 210  Q
    |||||||||||   |||||||||||||||||| || ||| ||||||||||||||||||| ||| ||||| | ||||| ||||||    
T  37621905 cttttttggaccacacgtatattatagggtcaaaagtaagaagaatctcaaattacatggttaaaatatctattttttatttta 37621988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 126 - 232
Target Start/End: Complemental strand, 15441595 - 15441489
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 225  Q
    |||||||||||||| |  ||||||| | ||| | ||||||||||||| ||||||||||   ||||||||| || |||| ||||||||| || ||| ||||    
T  15441595 gcttttttggacttcaactatattacatggtgaaaaataataagaatatcaaattacagagttagaatatatggtttttattttaaagggttatttttca 15441496  T
Q  226 gacttcg 232  Q
    |||||||    
T  15441495 gacttcg 15441489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 263
Target Start/End: Original strand, 18829830 - 18829932
Alignment:
Q  161 aataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaat 260  Q
    ||||||||||||||||||||||| | |||||||||||| |||| |||||| |  |||||| |||||||||    ||||||| |  ||||||||||| |||    
T  18829830 aataataagaatctcaaattacagggttagaatatgtgctttttattttacaatgtcatttttcagactttacatatattacatggtcaatttcaataat 18829929  T
Q  261 taa 263  Q
    |||    
T  18829930 taa 18829932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 263
Target Start/End: Original strand, 17373669 - 17373814
Alignment:
Q  118 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtc 217  Q
    ||||| || ||||||||||| |  ||||||||||| ||||| |||||  |||||||||||||||||   ||||||||| | ||||| |||||| |  |||    
T  17373669 tctagatcacttttttggacctcgcgtatattataaggtcaaaaatacgaagaatctcaaattacagagttagaatatctattttttattttacatggtc 17373768  T
Q  218 attgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    ||| ||||||| | | |||| ||| ||  ||||||| |||||||||    
T  17373769 atttttcagacattgggtattttacaggctcaatttaaacaattaa 17373814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 186
Target Start/End: Complemental strand, 7071802 - 7071742
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgt 186  Q
    ||||||||||||||  |||||||||  |||| ||||||||||| ||||||||| |||||||    
T  7071802 gcttttttggacttcgcgtatattagtgggttataaataataaaaatctcaaactacatgt 7071742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 17444303 - 17444236
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    |||||||||||||| |||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  17444303 gcttttttggacttcacgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 17444236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 26161970 - 26161903
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  26161970 gcttttttggacttcgcgtatattacagggt-ataaataataaaaatctcgaattacatggtcagaata 26161903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 259
Target Start/End: Complemental strand, 26238201 - 26238130
Alignment:
Q  188 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaa 259  Q
    |||||||| ||||||  |||||| || |||||| ||||||| |  ||||||||||||||||||||| |||||    
T  26238201 tagaatatatgttttgtattttacagggtcatttttcagacataatgtatattatagagtcaatttgaacaa 26238130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 144 - 203
Target Start/End: Complemental strand, 26591355 - 26591296
Alignment:
Q  144 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgttttt 203  Q
    ||||||||||||||| |||||| |||||| | |||||||||| |||||||| || |||||    
T  26591355 tatattatagggtcaaaaataagaagaatatgaaattacatggttagaataagtattttt 26591296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 168
Target Start/End: Complemental strand, 12756107 - 12756065
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataa 168  Q
    ||||||||||||||  ||||||||||||||| |||||||||||    
T  12756107 gcttttttggacttcgcgtatattatagggttataaataataa 12756065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 263
Target Start/End: Original strand, 15512385 - 15512522
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttca 225  Q
    |||||||||||||| |  ||||||| || |  | ||||||||| ||||||||||||||   ||||||||| ||||||| |||||  ||  ||||| ||||    
T  15512385 gcttttttggacttcaactatattacagagaaaaaaataataaaaatctcaaattacagagttagaatatatgttttttatttttcagcatcatttttca 15512484  T
Q  226 gacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    || ||| | ||||||  |  ||||||||||| ||||||    
T  15512485 gatttcatatatattgcatggtcaatttcaataattaa 15512522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 127 - 213
Target Start/End: Complemental strand, 30325521 - 30325429
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaat------ctcaaattacatgtttagaatatgtgtttttaattttaaag 213  Q
    |||||||||||||   ||||||||||| |||| |||||| |||||       ||||||||||| | ||||||||||||||| |||||||||||    
T  30325521 cttttttggacttcgtgtatattatagagtcaaaaataagaagaaaaaaaaactcaaattacaagattagaatatgtgtttataattttaaag 30325429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 160 - 233
Target Start/End: Original strand, 40654140 - 40654213
Alignment:
Q  160 aaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgt 233  Q
    |||||||||  ||||||||||| | | |||||||||||| |||| | |||| ||||| ||| ||||||||||||    
T  40654140 aaataataaacatctcaaattagagggttagaatatgtgatttttagtttacagagttatttttcagacttcgt 40654213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 771632 - 771700
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||||| || |||||||| |||||| ||||| ||| | ||||||    
T  771632 gcttttttggacttcgcgtatattacagggttatgaataataaaaatctcgaattatatggtcagaata 771700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 6403071 - 6403004
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  6403071 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 6403004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 18982443 - 18982510
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  18982443 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 18982510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 41250900 - 41250833
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  41250900 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 41250833  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 118 - 242
Target Start/End: Original strand, 17458081 - 17458204
Alignment:
Q  118 tctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaatttta-aagagt 216  Q
    ||||| || ||||| |||||||  | |||||||||| |||| |||||| ||||||||||||||||| |  ||||||||||||||||| ||| | |||| |    
T  17458081 tctaggtcacttttatggacttcgcatatattatagcgtcaaaaataagaagaatctcaaattaca-gagtagaatatgtgtttttattttaacaaga-t 17458178  T
Q  217 cattgttcagacttcgtgtatattat 242  Q
    |||| ||||||||  |||||||||||    
T  17458179 catttttcagactaagtgtatattat 17458204  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 17446191 - 17446259
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  17446191 gcttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 17446259  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 41971525 - 41971457
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||||  ||||||||||| |||||||| ||||||||| ||||||    
T  41971525 gcttttttggacttcgcgtatattacagggctataaataataaaaatctcaagttacatgttcagaata 41971457  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 127 - 194
Target Start/End: Complemental strand, 15209557 - 15209490
Alignment:
Q  127 cttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    |||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||||| ||||||    
T  15209557 cttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatgttcagaata 15209490  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 128 - 194
Target Start/End: Original strand, 3829883 - 3829949
Alignment:
Q  128 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||  ||||||||| ||||| ||||||||||| |||||| ||||||||| | ||||||    
T  3829883 ttttttggacttcgcgtatattacagggttataaataataaaaatctcgaattacatggtcagaata 3829949  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 263
Target Start/End: Original strand, 17745041 - 17745162
Alignment:
Q  144 tatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtt--tttaattttaaagagtcattgttcagacttcgtgtatatta 241  Q
    ||||||| | ||||| ||||||||| ||||||||||| |||| ||||||||||| ||  ||| |||||| ||  ||||| |||||||||||  |||||||    
T  17745041 tatattacacggtcaaaaataataaaaatctcaaattgcatggttagaatatgtttttattttattttacaggttcatttttcagacttcgaatatatta 17745140  T
Q  242 tagagtcaatttcaacaattaa 263  Q
     |  |||||| |||| ||||||    
T  17745141 catggtcaatgtcaataattaa 17745162  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 9901855 - 9901968
Alignment:
Q  147 attatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagag 246  Q
    |||||||||||| |||||| |||||| | |||||||||| |||||  |||||||||| |||||| ||  | ||| |||| || ||| || ||||| ||||    
T  9901855 attatagggtcaaaaataagaagaatataaaattacatggttaga--atgtgttttttattttataggattatttttcaaacatcgcgtgtattacagag 9901952  T
Q  247 tcaatttcaacaatta 262  Q
    | ||||| ||||||||    
T  9901953 ttaatttgaacaatta 9901968  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 141 - 263
Target Start/End: Complemental strand, 3829291 - 3829166
Alignment:
Q  141 acgtatattatag---ggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtat 237  Q
    |||||||||||||   ||||| |||||| |||||  |||| |||||   ||||||||| ||||||  |||||| || |||||| ||||||| |  |||||    
T  3829291 acgtatattatagggtggtcaaaaataagaagaaattcaagttacaaagttagaatatatgttttgtattttacagggtcatttttcagacataatgtat 3829192  T
Q  238 attatagagtcaatttcaacaattaa 263  Q
    |||| || |||||||| |||||||||    
T  3829191 attacagggtcaatttgaacaattaa 3829166  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 262
Target Start/End: Original strand, 33658895 - 33658941
Alignment:
Q  216 tcattgttcagacttcgtgtatattatagagtcaatttcaacaatta 262  Q
    ||||| ||| |||||||||||||||||||||||||||| ||| ||||    
T  33658895 tcatttttctgacttcgtgtatattatagagtcaatttgaacgatta 33658941  T

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Target: scaffold0134 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 263
Target Start/End: Original strand, 18213 - 18340
Alignment:
Q  136 actttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgt 235  Q
    |||| ||| |||||| ||||||||||||||||||||||| || ||||| | ||| ||||||| ||||  ||||||  | ||||||  ||| ||||||  |    
T  18213 acttcacgaatattacagggtcataaataataagaatcttaacttacaggattataatatgttttttatattttactgggtcatttgtcatacttcgctt 18312  T
Q  236 atattatagagtcaatttcaacaattaa 263  Q
    |||||| ||  |||||||||| ||||||    
T  18313 atattacaggatcaatttcaataattaa 18340  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 232
Target Start/End: Complemental strand, 16793897 - 16793782
Alignment:
Q  117 atctagttcgcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagt 216  Q
    |||||| ||| |||| ||||||||  |||||||| | ||| | ||||||||| | |||| ||||| |  ||||||||||||| |||| |||||| |||||    
T  16793897 atctaggtcgtttttctggactttgtgtatattacaaggtaaaaaataataaaactctcgaattatagatttagaatatgtgctttttattttacagagt 16793798  T
Q  217 cattgttcagacttcg 232  Q
     ||| |||||||||||    
T  16793797 aatttttcagacttcg 16793782  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 128 - 263
Target Start/End: Original strand, 23217804 - 23217939
Alignment:
Q  128 ttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcaga 227  Q
    |||||||||||| ||| |||||| |  |||||||||||||||||| |  | ||||| | ||||||||||||||||  ||||||    |||||| ||||||    
T  23217804 ttttttggacttcacgaatattacaaagtcataaataataagaatattgagttacagggttagaatatgtgttttatattttactaggtcatttttcaga 23217903  T
Q  228 cttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    | ||   ||||||| || ||||||||||| ||||||    
T  23217904 catcacttatattacagggtcaatttcaataattaa 23217939  T

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Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 163 - 241
Target Start/End: Original strand, 28932958 - 28933036
Alignment:
Q  163 taataagaatctcaaattacatgtttagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatatta 241  Q
    |||||||||| |||||||||| | ||| ||||||||||||| |||||| ||  ||||| |||||||||||  |||||||    
T  28932958 taataagaatttcaaattacagggttaaaatatgtgttttttattttacaggttcatttttcagacttcgcatatatta 28933036  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 263
Target Start/End: Complemental strand, 28996988 - 28996913
Alignment:
Q  188 tagaatatgtgtttttaattttaaagagtcattgttcagacttcgtgtatattatagagtcaatttcaacaattaa 263  Q
    |||||||| ||||||  ||||| |||||||||| ||||||| |   |||||||| ||||||||||| |||||||||    
T  28996988 tagaatatatgttttgtatttttaagagtcatttttcagacataaggtatattacagagtcaatttgaacaattaa 28996913  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 399517 - 399584
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  399517 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 399584  T

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Target: scaffold0154 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 126 - 194
Target Start/End: Original strand, 32113 - 32181
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| | ||| ||||||||||| |||||| ||||||||| | ||||||    
T  32113 gcttttttggacttcgcgtatattacaaggttataaataataaaaatctcgaattacatggtcagaata 32181  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 194
Target Start/End: Complemental strand, 479724 - 479657
Alignment:
Q  126 gcttttttggactttacgtatattatagggtcataaataataagaatctcaaattacatgtttagaata 194  Q
    ||||||||||||||  ||||||||| ||| | ||||||||||| |||||| ||||||||| | ||||||    
T  479724 gcttttttggacttcgcgtatattacaggtt-ataaataataaaaatctcgaattacatggtcagaata 479657  T

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