View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1570_low_1 (Length: 481)
Name: NF1570_low_1
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1570_low_1 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 47837250 - 47837730
Alignment:
| Q |
1 |
ccttcaatagtctctcaactatgtattgcaatcgcctcccaatcagtatttacagagcaaacagagactgttatatggttggtaaatagtgtcgtggcgg |
100 |
Q |
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| T |
47837250 |
ccttcaatagtctctcaactatgtattgcaatcacctcccaatcagtatttacagagcaaacagagactgttatattgttggtaaatagtgtcgtggcgg |
47837349 |
T |
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| Q |
101 |
tgctactagtctgtgaaaattaacaatcacttcacaccgcaataaccacaatcgcaacgactgcaaccacatccgagaccacaaacacaattttaaacca |
200 |
Q |
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| T |
47837350 |
tgctactagtctgtgaaaattaacaatcacttcacaccgcaataaccacaatcgcaacgactgcaaccacatccgagaccacaaccacaatttaaaacca |
47837449 |
T |
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| Q |
201 |
tgattattaactgagacgtcaataaagttagaattatttttctaattttggtgccttttcaagtcagtttttcaaaagaaagaatttggaaatatagaga |
300 |
Q |
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| T |
47837450 |
tgattattacctgagacgtcaatatagttagaattattttcataattgtgttgcctttacatgtcagtttatcaaaagaaagaatttggaaatatagaga |
47837549 |
T |
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| Q |
301 |
attcacaacgttggtttttgtcaggactgtcatcattatgcatgaaaaatacaccgtggaacttcattttagtaaacctgttttgagaagagagaaaaag |
400 |
Q |
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| T |
47837550 |
atttacaacgttggtttttgtcaggactgtcatcattatgcatgataaatacaccgtggaacttcattttagtaaacctgttttgagaagagagaaaaag |
47837649 |
T |
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| Q |
401 |
atgcattgtaacataaattaattgtaaattatgatttatccatggtatgtagaatattatataggagtttgaaatttttaa |
481 |
Q |
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| T |
47837650 |
atgcattgtaacataaattaattgtaaattatgatttatccatggtatgtagaatattatataggagtttgaaatttttaa |
47837730 |
T |
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Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 92
Target Start/End: Complemental strand, 27170326 - 27170245
Alignment:
| Q |
11 |
tctctcaactatgtattgcaatcgcctcccaatcagtatttacagagcaaacagagactgttatatggttggtaaatagtgt |
92 |
Q |
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| T |
27170326 |
tctctcaactgtgtatttcaagctctttccaatcagtatttagagagcaaactgagactctactatggtggataaatagtgt |
27170245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 51854667 - 51854614
Alignment:
| Q |
9 |
agtctctcaactatgtattgcaatcgcctcccaatcagtatttacagagcaaac |
62 |
Q |
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| T |
51854667 |
agtctctcaaatgtgtatttcaagcacctcccaatcagtatttacaaagcaaac |
51854614 |
T |
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