View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1570_low_11 (Length: 272)
Name: NF1570_low_11
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1570_low_11 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 272
Target Start/End: Original strand, 9363366 - 9363636
Alignment:
| Q |
1 |
aaccaaattaattttatagaggccnnnnnnnnncaccaaattttttgaagcataaagcccttgtttgggttgcttgaccgttaggccgggccagtcagct |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9363366 |
aaccaaattaattttatagaggcctttttttt-caccaaattttttgaagcataaagcccttgtttgggttgcttgaccgttaggccgggccagtcagct |
9363464 |
T |
|
| Q |
101 |
tgtgtttacaaatattgttctcaccaaatgagaataaagtagtaataactaataagcatatatgtgcagtttgatgagtgtaaaaggttgtactcgcatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
9363465 |
tgtgtttacaaatattgttctcaccaaatgagaataaagtagtaataactaataagcatatatgtgcagtttgatgagagtaaaaggttgaactcgcatc |
9363564 |
T |
|
| Q |
201 |
aaaattcggatagctcaaagcagaatgttgagaactcagacaaagtaaagattgtgttagaagaaaaggaag |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9363565 |
aaaattcggatagctcaaagcagaatgttgagaactcagacaaagtaaagattgtgttagaagaaaaggaag |
9363636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University