View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1570_low_13 (Length: 259)
Name: NF1570_low_13
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1570_low_13 |
 | |
|
| [»] scaffold0363 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0363 (Bit Score: 231; Significance: 1e-127; HSPs: 1)
Name: scaffold0363
Description:
Target: scaffold0363; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Complemental strand, 14539 - 14305
Alignment:
| Q |
19 |
cttttctatttcttatcggagagagatattttttggtttacatttttaattcgatctatgttgatgagaacattgttgattgaaattgactttgaggatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14539 |
cttttctatttcttatcggagagagatattttttggtttacatttttaattcgatctatgttgatgagaacattgttgattgaaattgactttgaggatc |
14440 |
T |
|
| Q |
119 |
aagcccaatttgatacatgtctattttgaacatacttacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14439 |
aagcccaatttgatacatgtctattttgaacatacatacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaatt |
14340 |
T |
|
| Q |
219 |
ttaagattcatatgaagttttggttcttacctttg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14339 |
ttaagattcatatgaagttttggttcttacctttg |
14305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 231; Significance: 1e-127; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 19 - 253
Target Start/End: Original strand, 14404314 - 14404548
Alignment:
| Q |
19 |
cttttctatttcttatcggagagagatattttttggtttacatttttaattcgatctatgttgatgagaacattgttgattgaaattgactttgaggatc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404314 |
cttttctatttcttatcggagagagatattttttggtttacatttttaattcgatctatgttgatgagaacattgttgattgaaattgactttgaggatc |
14404413 |
T |
|
| Q |
119 |
aagcccaatttgatacatgtctattttgaacatacttacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaatt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404414 |
aagcccaatttgatacatgtctattttgaacatacatacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaatt |
14404513 |
T |
|
| Q |
219 |
ttaagattcatatgaagttttggttcttacctttg |
253 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
14404514 |
ttaagattcatatgaagttttggttcttacctttg |
14404548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 235
Target Start/End: Complemental strand, 5608450 - 5608333
Alignment:
| Q |
118 |
caagcccaatttgatacatgtctattttgaacatacttacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaat |
217 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||| | ||||||| |||||||| | |||| ||||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
5608450 |
caagcccacttcgatacatgtgtattttgaacatgcatacaaacataagtgatttgtgagaatatttgaatatcttgctagttttgcctaagattttaat |
5608351 |
T |
|
| Q |
218 |
tttaagattcatatgaag |
235 |
Q |
| |
|
|||| |||||| |||||| |
|
|
| T |
5608350 |
tttatgattcagatgaag |
5608333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 118 - 235
Target Start/End: Original strand, 5626920 - 5627037
Alignment:
| Q |
118 |
caagcccaatttgatacatgtctattttgaacatacttacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatattttaat |
217 |
Q |
| |
|
|||||||| || ||||||||| |||||||||||| | ||||||| |||||||| | |||| ||||| ||||||| ||||||||||||| |||||||| |
|
|
| T |
5626920 |
caagcccacttcgatacatgtgtattttgaacatgcatacaaacataagtgatttgtgagaatatttgaatatcttgctagttttgcctaagattttaat |
5627019 |
T |
|
| Q |
218 |
tttaagattcatatgaag |
235 |
Q |
| |
|
|||| |||||| |||||| |
|
|
| T |
5627020 |
tttatgattcagatgaag |
5627037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 6310816 - 6310739
Alignment:
| Q |
176 |
tgaatgtttgagtatcttgttagttttgcctaatattttaattttaagattcatatgaagttttggttcttacctttg |
253 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||| ||||||||| |||||| |||| | ||||||||| |
|
|
| T |
6310816 |
tgaatgtttgagtattttgttagtttttcctaatattttaattctaagattcagatgaagaattggattttacctttg |
6310739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 113 - 227
Target Start/End: Original strand, 5571062 - 5571176
Alignment:
| Q |
113 |
aggatcaagcccaatttgatacatgtctattttgaacatacttacaaacgaaagtgattcatctgaatgtttgagtatcttgttagttttgcctaatatt |
212 |
Q |
| |
|
|||||||||||||||| ||| |||| |||||||||||||| ||||| ||||| |||| | ||||||| |||||| || |||||||| ||| ||||| |
|
|
| T |
5571062 |
aggatcaagcccaattcaatatatgtttattttgaacatacacacaaattaaagttattcgtgtgaatgtatgagtacttttttagtttttcctgatatt |
5571161 |
T |
|
| Q |
213 |
ttaattttaagattc |
227 |
Q |
| |
|
||||||| ||||||| |
|
|
| T |
5571162 |
ttaatttaaagattc |
5571176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 45577857 - 45577908
Alignment:
| Q |
45 |
tattttttggtttacatttttaattcgatctatgttgatgagaacattgttg |
96 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45577857 |
tattttttggtttatgtttttaatccgatctatgttgatgagaacattgttg |
45577908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 96
Target Start/End: Complemental strand, 28610910 - 28610834
Alignment:
| Q |
20 |
ttttctatttcttatcggagagagatattttttggtttacatttttaattcgatctatgttgatgagaacattgttg |
96 |
Q |
| |
|
|||| |||||||||||| ||||| | ||||||||| | |||||||||| | |||||||||||| ||||||||||| |
|
|
| T |
28610910 |
ttttgtatttcttatcgaagagaattgttttttggtccatatttttaatttggtctatgttgatgggaacattgttg |
28610834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University