View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1570_low_20 (Length: 212)
Name: NF1570_low_20
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1570_low_20 |
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| [»] scaffold0001 (1 HSPs) |
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| [»] scaffold0247 (1 HSPs) |
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| [»] scaffold0193 (1 HSPs) |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 10 - 197
Target Start/End: Complemental strand, 33699073 - 33698886
Alignment:
| Q |
10 |
tatattattctgtggacaaataaggaaagtgcatatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggct |
109 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33699073 |
tatatttttctgtggacaaataaggaaagtgcatatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggct |
33698974 |
T |
|
| Q |
110 |
tgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacaggtatttgtatttagctagaagtaactcatgagaaac |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33698973 |
tgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacaggtatttgtatttagctagaagtaactcatgagaaac |
33698886 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 31 - 165
Target Start/End: Complemental strand, 33736571 - 33736436
Alignment:
| Q |
31 |
aaggaaag-tgcatatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtga |
129 |
Q |
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|||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||| || |||||||||||||| || || ||||||||||| |
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| T |
33736571 |
aaggaaagctgcatatggagaagactagaagtttgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtga |
33736472 |
T |
|
| Q |
130 |
aggaaaatggcatttagttcctaaacgaacaggtat |
165 |
Q |
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||||||||||||||||||| || || || ||||||| |
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| T |
33736471 |
aggaaaatggcatttagtttctcaaagagcaggtat |
33736436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 36 - 174
Target Start/End: Complemental strand, 33680513 - 33680375
Alignment:
| Q |
36 |
aagtgcatatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaa |
135 |
Q |
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||||||||||||| ||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||| || || || || ||||||||||| || |
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| T |
33680513 |
aagtgcatatggaaaagaccagaggtttgagaaaaggtgcatggacatatgaggaggacaatctactcaaggactgtattcaaaaatatggtgaagggaa |
33680414 |
T |
|
| Q |
136 |
atggcatttagttcctaaacgaacaggtatttgtattta |
174 |
Q |
| |
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||||||||||||||||||| || |||||| ||||||||| |
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| T |
33680413 |
atggcatttagttcctaaaagagcaggtacttgtattta |
33680375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 56 - 165
Target Start/End: Complemental strand, 33823251 - 33823142
Alignment:
| Q |
56 |
agaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaac |
155 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| || |||||||||||| ||| |||||||||||||||||||||||||||||| |||| ||| |
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| T |
33823251 |
agaggtttgagaaaaggtgcatggacatatgaggaagacaacttactcaaggcttacattcacaagtatggtgaaggaaaatggcatttaattcccaaaa |
33823152 |
T |
|
| Q |
156 |
gaacaggtat |
165 |
Q |
| |
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|||||||||| |
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|
| T |
33823151 |
gaacaggtat |
33823142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 54 - 150
Target Start/End: Complemental strand, 33867415 - 33867319
Alignment:
| Q |
54 |
ctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcc |
150 |
Q |
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|
|||||||| ||||||||||||||||||||||||||||||| || |||||||||||||| || || |||||||||||||||||||||||||||||||| |
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| T |
33867415 |
ctagaggtgtgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatgcagaagtatggtgaaggaaaatggcatttagttcc |
33867319 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 42 - 150
Target Start/End: Complemental strand, 33904971 - 33904863
Alignment:
| Q |
42 |
atatggagaaggctagaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggca |
141 |
Q |
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|
||||||||| | | ||||| ||||||||||||||||||||||||||||||| || |||||||||||||| || || ||||||||||||||||||||||| |
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| T |
33904971 |
atatggagatgaccagaggcgtgagaaaaggtgcatggacatatgaggaagacaagctactcaaggcttgtatacagaagtatggtgaaggaaaatggca |
33904872 |
T |
|
| Q |
142 |
tttagttcc |
150 |
Q |
| |
|
||||||||| |
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|
| T |
33904871 |
tttagttcc |
33904863 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 70 - 150
Target Start/End: Complemental strand, 33763801 - 33763721
Alignment:
| Q |
70 |
aggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcc |
150 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||| |
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| T |
33763801 |
aggtgcctggacatatgaggaagataagctactcaaggcttgcattaacaagtatggtgaaggaaaatggcattttgttcc |
33763721 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 64 - 165
Target Start/End: Complemental strand, 33750277 - 33750176
Alignment:
| Q |
64 |
gagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacaggt |
163 |
Q |
| |
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||||||| || | ||||||| ||||||||| || ||||||| |||| || ||||||||||||||||||||||||||||| |||||||| || ||||| |
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| T |
33750277 |
gagaaaacgtacgtggacatctgaggaagacaagttactcaaagcttatattaacaagtatggtgaaggaaaatggcatttaattcctaaaagagcaggt |
33750178 |
T |
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| Q |
164 |
at |
165 |
Q |
| |
|
|| |
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|
| T |
33750177 |
at |
33750176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 149352 - 149251
Alignment:
| Q |
63 |
tgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacagg |
162 |
Q |
| |
|
||||||||||||| |||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| || || |||| |
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|
| T |
149352 |
tgagaaaaggtgcctggacatacgaggaagataagctactcaaggcttgcattgacaagtatggggaaggaaaatggcatttagttcctcaaagagcagg |
149253 |
T |
|
| Q |
163 |
ta |
164 |
Q |
| |
|
|| |
|
|
| T |
149252 |
ta |
149251 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 5468533 - 5468617
Alignment:
| Q |
67 |
aaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcct |
151 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||||||||||| ||| ||||||||||||||||||||||||||||| ||||| |
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|
| T |
5468533 |
aaaaggtgcatggacatacgaggaagacaacttactcaaggcttacattaacaagtatggtgaaggaaaatggcatttaattcct |
5468617 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 57 - 151
Target Start/End: Complemental strand, 21306422 - 21306328
Alignment:
| Q |
57 |
gaggtttgagaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcct |
151 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||||| | ||||||||||||||||| ||| ||| ||||||||||||||| ||||||||||| |
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|
| T |
21306422 |
gaggtgtgagaaaaggcgcatggacttacaaggaagatgagctactcaaggcttgcattaacacgtacggtgaaggaaaatggaatttagttcct |
21306328 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0247 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0247
Description:
Target: scaffold0247; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 19852 - 19952
Alignment:
| Q |
65 |
agaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacaggta |
164 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||||| ||| | |||| |||||| |||||||||||||||| ||||| || ||||||||| |
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|
| T |
19852 |
agaaaaggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaacaggta |
19951 |
T |
|
| Q |
165 |
t |
165 |
Q |
| |
|
| |
|
|
| T |
19952 |
t |
19952 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0193 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: scaffold0193
Description:
Target: scaffold0193; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 65 - 165
Target Start/End: Original strand, 23300 - 23400
Alignment:
| Q |
65 |
agaaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcctaaacgaacaggta |
164 |
Q |
| |
|
||||||||||||||||||||||| ||||| || |||||||||| ||| | |||| |||||| |||||||||||||||| ||||| || ||||||||| |
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|
| T |
23300 |
agaaaaggtgcatggacatatgaagaagacaactgtctcaaggcttacattctcaagcatggtgtaggaaaatggcatttaattcctgaaagaacaggta |
23399 |
T |
|
| Q |
165 |
t |
165 |
Q |
| |
|
| |
|
|
| T |
23400 |
t |
23400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0023 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 88893 - 88977
Alignment:
| Q |
67 |
aaaaggtgcatggacatatgaggaagataatctactcaaggcttgcatccacaagtatggtgaaggaaaatggcatttagttcct |
151 |
Q |
| |
|
||||||| | ||||| |||| |||||||| |||||||||| ||||| ||||||||||| |||||||||||||| |||||||| |
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|
| T |
88893 |
aaaaggtacctggacgaatgaagaagataacttactcaaggcatgcattaacaagtatggtcaaggaaaatggcatctagttcct |
88977 |
T |
|
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