View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1570_low_3 (Length: 438)
Name: NF1570_low_3
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1570_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 347; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 19 - 427
Target Start/End: Complemental strand, 30835482 - 30835078
Alignment:
| Q |
19 |
tccttgtcctcaaccagaaaaggttattggcctcacaaatcattcggatcctcaaggtgttactctcctcctacaactcaatgaagtagaaggtctccaa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30835482 |
tccttgtcctcaaccagaaaaggttattggcctcacaaatcattcggatcctcaaggtgttactctcctcctacaactcaatgaagtagaaggtctccaa |
30835383 |
T |
|
| Q |
119 |
ataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtcctagaggtnnnnnnnttcattcatatat |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
30835382 |
ataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtgctagaggtaaaaaaattcattcatatat |
30835283 |
T |
|
| Q |
219 |
caaacaatttatagtactcaatgatttaaatagagcttgttgaataaataaataaataaatagcattaattcaacgctgactaaagataaggtgatgata |
318 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
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| T |
30835282 |
caaacaatttatagtactcaatgatttaaatagagcttgttg----aataaataaataaatagcattaattcaacgttgactaaagataaggtgaggata |
30835187 |
T |
|
| Q |
319 |
gagatagtgtctgtttgaattgacagtaagtttgacaaaattacggtgattttgatgaaaatctaaagtataattttagtttaaatggtcatagcccatc |
418 |
Q |
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|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
30835186 |
gagatagtgtctgtttgaattgacggtaagattgacaaaattacggtgattttgatgaaaatctaaagtataattctagtttaaatggtcatagcccatc |
30835087 |
T |
|
| Q |
419 |
gtgatttca |
427 |
Q |
| |
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||||||||| |
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| T |
30835086 |
gtgatttca |
30835078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 20 - 198
Target Start/End: Complemental strand, 30840094 - 30839916
Alignment:
| Q |
20 |
ccttgtcctcaaccagaaaaggttattggcctcacaaatcattcggatcctcaaggtgttactctcctcctacaactcaatgaagtagaaggtctccaaa |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||||||||||||| || ||| |||| | ||| ||||| |||||||||||||||||||||| | || | |
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| T |
30840094 |
ccttgtcctcaaccagagaaggttattggtctcacaaatcattcagaccctgtaggtctcactatcctcttacaactcaatgaagtagaagggttacaga |
30839995 |
T |
|
| Q |
120 |
taaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtcctagaggt |
198 |
Q |
| |
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|||||||| || | ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||| | |||||||| |
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| T |
30839994 |
taaggaaaaattgcatgtgggttcctgttaaaccccttcccaatgccttcattgtcaacattggtgacatgctagaggt |
30839916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 30828054 - 30827951
Alignment:
| Q |
84 |
tcctcctacaactcaatgaagtagaaggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattgg |
183 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
30828054 |
tccttctacaactcaatgatgtagaagggctccaagtgaggaaagatggtatgtgggttcctgttaaacccctgcctaatgccttcattgttaacattgg |
30827955 |
T |
|
| Q |
184 |
ggac |
187 |
Q |
| |
|
|||| |
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|
| T |
30827954 |
ggac |
30827951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 84 - 187
Target Start/End: Complemental strand, 30852947 - 30852844
Alignment:
| Q |
84 |
tcctcctacaactcaatgaagtagaaggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattgg |
183 |
Q |
| |
|
|||| |||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||||||| |
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| T |
30852947 |
tccttctacaactcaatgatgtagaagggctccaagtgaggaaagatggtatgtgggttcctgttaaacccctgcctaatgccttcattgttaacattgg |
30852848 |
T |
|
| Q |
184 |
ggac |
187 |
Q |
| |
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|||| |
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|
| T |
30852847 |
ggac |
30852844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 26914306 - 26914200
Alignment:
| Q |
92 |
caactcaatgaagtagaaggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtcc |
191 |
Q |
| |
|
|||||||||||| ||||||| || ||||||| |||||||| |||||| ||||| ||||||| || | ||||| || || |||||||||| ||| | | |
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| T |
26914306 |
caactcaatgaaatagaaggccttcaaataaaaaaagatggaatgtggattcctattaagcctctcacaaatgcttttgttatcaacattggagacatgc |
26914207 |
T |
|
| Q |
192 |
tagaggt |
198 |
Q |
| |
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||||||| |
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|
| T |
26914206 |
tagaggt |
26914200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 92 - 198
Target Start/End: Original strand, 21211924 - 21212030
Alignment:
| Q |
92 |
caactcaatgaagtagaaggtctccaaataaggaaagatggtatgtgggttcctgttaagcccctgcccaatgccttcattgtcaacattggggacgtcc |
191 |
Q |
| |
|
|||||||||||| ||||||| || ||||||| |||||||| |||||| ||||| ||||||| || | ||||| || || |||||||||| ||| | | |
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| T |
21211924 |
caactcaatgaaatagaaggccttcaaataaaaaaagatggaatgtggattcctattaagcctctcacaaatgcttttgttatcaacattggagacatgc |
21212023 |
T |
|
| Q |
192 |
tagaggt |
198 |
Q |
| |
|
||||||| |
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|
| T |
21212024 |
tagaggt |
21212030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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