View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1570_low_4 (Length: 437)

Name: NF1570_low_4
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1570_low_4
NF1570_low_4
[»] chr3 (33 HSPs)
chr3 (1-358)||(18355684-18356035)
chr3 (167-358)||(19771756-19771941)
chr3 (12-157)||(54086673-54086818)
chr3 (1-161)||(6901673-6901830)
chr3 (1-169)||(46694109-46694278)
chr3 (1-161)||(23087938-23088099)
chr3 (1-168)||(13364952-13365120)
chr3 (1-168)||(36881389-36881557)
chr3 (15-168)||(13703338-13703489)
chr3 (1-159)||(24064333-24064488)
chr3 (9-168)||(48436344-48436501)
chr3 (31-168)||(29375272-29375409)
chr3 (1-168)||(198964-199132)
chr3 (1-168)||(19241668-19241836)
chr3 (10-168)||(3383194-3383353)
chr3 (87-161)||(26783665-26783739)
chr3 (10-151)||(43750255-43750396)
chr3 (60-161)||(48820508-48820610)
chr3 (11-139)||(53559639-53559768)
chr3 (10-162)||(52009050-52009208)
chr3 (23-168)||(32834989-32835134)
chr3 (22-127)||(37293542-37293644)
chr3 (10-139)||(52805057-52805185)
chr3 (15-158)||(31873875-31874015)
chr3 (383-421)||(18355622-18355660)
chr3 (1-161)||(19896937-19897095)
chr3 (130-168)||(37293437-37293475)
chr3 (10-107)||(37781055-37781152)
chr3 (11-87)||(46188886-46188961)
chr3 (10-133)||(48963239-48963361)
chr3 (75-133)||(1455186-1455245)
chr3 (2-109)||(43159859-43159967)
chr3 (101-161)||(40228218-40228278)
[»] chr4 (24 HSPs)
chr4 (2-168)||(19692833-19692999)
chr4 (2-168)||(19703418-19703584)
chr4 (1-161)||(6128956-6129116)
chr4 (1-158)||(50767973-50768129)
chr4 (1-168)||(14261153-14261321)
chr4 (1-168)||(12071670-12071837)
chr4 (10-161)||(20249021-20249172)
chr4 (1-168)||(22321268-22321435)
chr4 (10-161)||(40122494-40122644)
chr4 (31-168)||(21310561-21310698)
chr4 (1-168)||(24706247-24706415)
chr4 (1-168)||(25704760-25704928)
chr4 (10-166)||(21661537-21661694)
chr4 (10-166)||(21670301-21670458)
chr4 (1-168)||(44568946-44569114)
chr4 (9-158)||(18507276-18507424)
chr4 (1-168)||(32543589-32543756)
chr4 (10-167)||(21064878-21065037)
chr4 (75-168)||(50839031-50839125)
chr4 (37-158)||(48652370-48652491)
chr4 (94-161)||(26676577-26676645)
chr4 (10-151)||(31892352-31892492)
chr4 (10-87)||(20714431-20714507)
chr4 (1-98)||(34324653-34324750)
[»] chr5 (24 HSPs)
chr5 (1-169)||(734338-734506)
chr5 (1-161)||(39070992-39071152)
chr5 (10-169)||(25683228-25683387)
chr5 (11-168)||(23097724-23097880)
chr5 (10-168)||(37900623-37900783)
chr5 (1-169)||(40886609-40886778)
chr5 (1-168)||(11319668-11319833)
chr5 (1-168)||(10285058-10285225)
chr5 (10-168)||(36561099-36561258)
chr5 (1-168)||(12806853-12807021)
chr5 (10-162)||(16054230-16054382)
chr5 (13-168)||(30720492-30720648)
chr5 (1-161)||(25773758-25773919)
chr5 (31-151)||(16983397-16983517)
chr5 (60-133)||(11795318-11795392)
chr5 (33-168)||(1056625-1056758)
chr5 (87-168)||(26168104-26168185)
chr5 (10-133)||(30402997-30403120)
chr5 (10-131)||(15629253-15629376)
chr5 (10-105)||(7277486-7277581)
chr5 (130-161)||(734576-734607)
chr5 (130-168)||(39070883-39070921)
chr5 (10-138)||(11797663-11797798)
chr5 (87-139)||(42174263-42174315)
[»] chr8 (26 HSPs)
chr8 (8-161)||(26628823-26628976)
chr8 (10-168)||(35866732-35866890)
chr8 (10-168)||(28568037-28568195)
chr8 (10-168)||(28575630-28575788)
chr8 (10-161)||(27035114-27035265)
chr8 (1-168)||(28562531-28562698)
chr8 (1-168)||(2539930-2540099)
chr8 (1-169)||(7147022-7147191)
chr8 (1-169)||(40058302-40058471)
chr8 (1-168)||(11174223-11174391)
chr8 (1-168)||(40918731-40918899)
chr8 (1-168)||(30999524-30999691)
chr8 (1-168)||(11646325-11646493)
chr8 (1-168)||(37345680-37345848)
chr8 (1-168)||(43275399-43275567)
chr8 (29-151)||(20546310-20546432)
chr8 (35-168)||(3585595-3585728)
chr8 (35-168)||(36068224-36068357)
chr8 (33-157)||(27563878-27564002)
chr8 (36-168)||(45400770-45400902)
chr8 (10-152)||(30906705-30906847)
chr8 (1-161)||(13880963-13881122)
chr8 (58-155)||(10180881-10180979)
chr8 (89-140)||(37510468-37510519)
chr8 (130-166)||(35866616-35866652)
chr8 (97-161)||(39151601-39151665)
[»] chr1 (29 HSPs)
chr1 (1-168)||(51064754-51064921)
chr1 (10-168)||(23526358-23526516)
chr1 (14-168)||(18396817-18396971)
chr1 (2-168)||(34458724-34458890)
chr1 (10-169)||(31003786-31003945)
chr1 (1-168)||(40783657-40783825)
chr1 (26-160)||(40261293-40261427)
chr1 (35-168)||(284477-284610)
chr1 (1-169)||(23045278-23045447)
chr1 (1-169)||(47037851-47038020)
chr1 (10-168)||(321744-321903)
chr1 (10-161)||(24876680-24876831)
chr1 (10-168)||(27143014-27143170)
chr1 (10-168)||(33082863-33083021)
chr1 (10-168)||(24771906-24772064)
chr1 (10-161)||(46771755-46771908)
chr1 (15-168)||(23166851-23167004)
chr1 (1-168)||(1837827-1837997)
chr1 (26-161)||(25929233-25929368)
chr1 (35-161)||(27210962-27211088)
chr1 (75-168)||(40562286-40562380)
chr1 (33-131)||(40052501-40052599)
chr1 (87-161)||(14925658-14925732)
chr1 (10-163)||(31061461-31061613)
chr1 (10-59)||(14351870-14351919)
chr1 (17-99)||(3657200-3657282)
chr1 (130-168)||(51064995-51065033)
chr1 (9-87)||(52478083-52478160)
chr1 (90-131)||(17581069-17581110)
[»] chr6 (18 HSPs)
chr6 (12-168)||(13757328-13757484)
chr6 (1-168)||(8235733-8235902)
chr6 (10-168)||(17942563-17942720)
chr6 (10-168)||(15064695-15064853)
chr6 (1-168)||(8626591-8626759)
chr6 (1-168)||(1605688-1605855)
chr6 (1-168)||(7761408-7761577)
chr6 (10-168)||(20398238-20398398)
chr6 (1-169)||(29260301-29260470)
chr6 (10-168)||(4129545-4129703)
chr6 (10-168)||(26860883-26861041)
chr6 (1-157)||(30734494-30734651)
chr6 (1-168)||(31559738-31559904)
chr6 (61-159)||(1814762-1814861)
chr6 (39-131)||(3798247-3798339)
chr6 (10-79)||(11370576-11370644)
chr6 (11-83)||(14287107-14287178)
chr6 (29-139)||(22784790-22784900)
[»] chr2 (25 HSPs)
chr2 (58-169)||(40756910-40757022)
chr2 (1-161)||(3519017-3519177)
chr2 (1-168)||(22388138-22388303)
chr2 (10-168)||(12969740-12969898)
chr2 (1-168)||(23366898-23367066)
chr2 (10-168)||(1102621-1102778)
chr2 (1-168)||(39938279-39938447)
chr2 (10-168)||(39561895-39562046)
chr2 (1-169)||(1646396-1646565)
chr2 (31-168)||(37673743-37673880)
chr2 (33-161)||(37284526-37284652)
chr2 (63-168)||(32838929-32839035)
chr2 (10-168)||(4917880-4918038)
chr2 (10-161)||(28110102-28110250)
chr2 (60-161)||(36447426-36447528)
chr2 (1-133)||(34242084-34242216)
chr2 (1-131)||(19976440-19976568)
chr2 (4-139)||(1002760-1002895)
chr2 (22-107)||(28401396-28401481)
chr2 (87-139)||(14779971-14780023)
chr2 (10-71)||(32840271-32840331)
chr2 (1-51)||(24777776-24777826)
chr2 (10-51)||(18078174-18078215)
chr2 (12-150)||(27900968-27901106)
chr2 (10-57)||(36447349-36447396)
[»] chr7 (17 HSPs)
chr7 (1-168)||(27813920-27814088)
chr7 (10-168)||(16662212-16662370)
chr7 (10-168)||(17636572-17636730)
chr7 (1-161)||(36453131-36453292)
chr7 (1-168)||(25614353-25614521)
chr7 (1-168)||(47110558-47110727)
chr7 (1-168)||(10981617-10981785)
chr7 (23-158)||(24456775-24456910)
chr7 (10-139)||(3091635-3091761)
chr7 (33-139)||(27941013-27941119)
chr7 (35-168)||(40349106-40349238)
chr7 (22-161)||(8380069-8380206)
chr7 (10-139)||(7743427-7743556)
chr7 (90-168)||(16360576-16360653)
chr7 (29-139)||(35112438-35112548)
chr7 (10-110)||(3498813-3498913)
chr7 (94-157)||(28200503-28200566)
[»] scaffold0343 (1 HSPs)
scaffold0343 (12-158)||(6911-7056)
[»] scaffold0054 (1 HSPs)
scaffold0054 (10-168)||(45572-45730)
[»] scaffold0168 (1 HSPs)
scaffold0168 (11-168)||(7788-7945)
[»] scaffold1770 (1 HSPs)
scaffold1770 (10-168)||(280-438)
[»] scaffold0062 (1 HSPs)
scaffold0062 (1-148)||(287-433)
[»] scaffold0056 (1 HSPs)
scaffold0056 (29-158)||(71221-71350)
[»] scaffold0076 (1 HSPs)
scaffold0076 (10-124)||(15367-15479)
[»] scaffold0025 (1 HSPs)
scaffold0025 (10-133)||(65200-65322)
[»] scaffold0939 (1 HSPs)
scaffold0939 (61-168)||(1110-1213)


Alignment Details
Target: chr3 (Bit Score: 235; Significance: 1e-130; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 18356035 - 18355684
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||||| |||||| |||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||||||||||    
T  18356035 cccttactcatttatcatttcattctattatttctctctctacaataaataagtaaggg-tattattgataaatcaataattaatgttgcattgaaactt 18355937  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtagcatccatcaagatccaatctttgttgtatt 199  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||    
T  18355936 gaaagtgacaagtaaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggagggagtagcatccatccagatccaatctttgttgtatt 18355837  T
Q  200 catttctccaacatttatttttaatatatatcacaaccaacaacgaaaccatttggatcgtataagatgactttatcatacctgattgatctaatgtacg 299  Q
    | |||||||||||||| |||| |  ||||||||||||||||| ||||||||| || |  |||||||||||||||||||||||||||||||||    || |    
T  18355836 cctttctccaacatttcttttca--atatatcacaaccaacatcgaaaccatctgaactgtataagatgactttatcatacctgattgatct----tatg 18355743  T
Q  300 tactctgcaaattaattttgtatgtaaatcaagaacaaaataatttatcagttatgcat 358  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  18355742 tactctgcaaattaagtttgtatgcaaatcaagaacaaaataatttattagttatgcat 18355684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 167 - 358
Target Start/End: Original strand, 19771756 - 19771941
Alignment:
Q  167 tagcatccatcaagatccaatctttgttgtattcatttctccaacatttatttttaatatatatcacaaccaacaacgaaaccatttggatcgtataaga 266  Q
    ||||||||||| || ||||||||||| |||| || |||||||||||||| |||| |||||  ||||||||||||| |||||||||||||| |||||||||    
T  19771756 tagcatccatccaggtccaatctttgctgtactcctttctccaacatttcttttcaatat--atcacaaccaacatcgaaaccatttggaccgtataaga 19771853  T
Q  267 tgactttatcatacctgattgatctaatgtacgtactctgcaaattaattttgtatgtaaatcaagaacaaaataatttatcagttatgcat 358  Q
    ||||||||||||| ||||||||||||||    |||||||||||||||| ||||||||||||||||||||||||| |||||| ||||||||||    
T  19771854 tgactttatcatagctgattgatctaat----gtactctgcaaattaagtttgtatgtaaatcaagaacaaaatgatttattagttatgcat 19771941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 12 - 157
Target Start/End: Original strand, 54086673 - 54086818
Alignment:
Q  12 ttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaa 110  Q
    ||||||||| ||||||||||||||||||||| |||| ||| ||||||| |||||||||||| |||||||||||||| | |||||||||||||||||||||    
T  54086673 ttattatttcattctattatttttctctctataatacataggtaaggg-tattattgataaatcaataattaatgttgtattgaaacttgaaagtgacaa 54086771  T
Q  111 ataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaa 157  Q
    ||||| |||||||||| |||||| |||||||||||||||||||||||    
T  54086772 ataaaatgaaacaaaagtattctccaaaatggacaagtattgtgaaa 54086818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 6901673 - 6901830
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||||| ||||||||||| ||||| |||||| |||||| ||||||||   || | || |||||||||||| ||||| |||||||| ||||||||||||    
T  6901673 cccttactcatttattatttcattctgttatttctctctcaacaataaa---gttaaggatattattgataaatcaatgattaatgttgcattgaaactt 6901769  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
     |||||||||| |||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  6901770 aaaagtgacaagtaaagtgaaacaaaattattctccaaaatggacaa-tattgtgaaacgga 6901830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 46694278 - 46694109
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  46694278 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 46694180  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  46694179 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtag 46694109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 23088099 - 23087938
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  23088099 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 23088001  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    |||||||||||| ||  ||||||||||||||||||| ||||| |||||||||| |||||||||    
T  23088000 tgaaagtgacaagtattgtgaaacaaaattattctttaaaatcgacaagtattatgaaacgga 23087938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 13364952 - 13365120
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  13364952 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 13365050  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||   |||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  13365051 tgaaagtgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 13365120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 36881389 - 36881557
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  36881389 cccttaattatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 36881487  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| ||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  36881488 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36881557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 168
Target Start/End: Original strand, 13703338 - 13703489
Alignment:
Q  15 ttatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaata 113  Q
    |||||| ||||||||  |||||||||| ||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||||||||||||||| ||    
T  13703338 ttatttcattctatt--ttttctctctgcaataaatatgcaaggg-tattattgacaacacaataattaatgttgcattgaaacttgaaagtgacaagta 13703434  T
Q  114 aagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
      || ||||||| |||||||||| |||||||||||||| ||||||||||||||||    
T  13703435 ttgtaaaacaaatttattcttcagaatggacaagtattatgaaacggatggagta 13703489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 159
Target Start/End: Original strand, 24064333 - 24064488
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgtg-cattgaaactt 99  Q
    |||||||  ||||||||||| |||||||||||| ||||||||||||||||| ||||    ||||||||||||  |||||||||||||  |||| ||||||    
T  24064333 cccttacccatttattattttattctattatttctctctctacaataaataggtaa----tattattgataaaccaataattaatgttacattaaaactt 24064428  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacg 159  Q
    ||||||||||  |||||||||| ||||||||||| |||||  |||| |||||||||||||    
T  24064429 gaaagtgacatgtaaagtgaaataaaattattctccaaaaacgacatgtattgtgaaacg 24064488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 48436344 - 48436501
Alignment:
Q  9 aatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    |||||||||||| ||| ||||||||  ||||||||||||||||| |||| | ||||||||| ||   |||||||||||| ||||||||||||||||||||    
T  48436344 aatttattatttcattatattattt--ctctctacaataaataattaagtg-tattattgacaagctaataattaatgttgcattgaaacttgaaagtga 48436440  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||| ||| |||||||||||||||||| |||||  ||||| ||||||||||  |||||||||    
T  48436441 caagtaatgtgaaacaaaattattctccaaaagtgacaaatattgtgaaatagatggagta 48436501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 29375272 - 29375409
Alignment:
Q  31 tttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaatta 129  Q
    ||||| ||||||||||||||| | |||||  |||||||| ||  ||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||    
T  29375272 tttttttctctacaataaatatgcaagggc-attattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaatta 29375370  T
Q  130 ttcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||  |||||||||||||||| ||||||||| ||||||    
T  29375371 ttctctaaaatggacaagtattatgaaacggagggagta 29375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 198964 - 199132
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  198964 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaaaacaataattaatgttgcattgaaact 199062  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||| |||||||||  |||||||||||||||| |  ||||||||||| |||| ||||| ||| ||||||    
T  199063 tgaaaatgacaaatattgtgaaacaaaattattttctaaaatggacaactattatgaaatggagggagta 199132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 19241836 - 19241668
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| || | |||| ||||||||||||||| | | ||||| ||||||||| || |||||||||||||| |||||||||||    
T  19241836 cccttaatcatttattatttcattttacttttttctctctctacaataaacatgcaaggg-tattattgacaagtcaataattaatgttgcattgaaact 19241738  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    | |||||||||| ||   |||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  19241737 taaaagtgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 19241668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 3383194 - 3383353
Alignment:
Q  10 atttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    ||||||||||| ||| |||| |||| ||||||||||||||||| | ||| | ||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  3383194 atttattatttcattttatttttttctctctctacaataaatatgcaagag-tattattgacaagacaataattaatgttgcattgaaacttgaaagtga 3383292  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||| ||  ||||||||||||||||||  |||||||||||||||| | ||||| | ||||||    
T  3383293 caagtattgtgaaacaaaattattctctaaaatggacaagtattataaaacgaaaggagta 3383353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 26783665 - 26783739
Alignment:
Q  87 tgcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| |||||||    
T  26783665 tgcattgaaacttgaaagtgacaagtaaagtgaaacaaaattattctttaaaatagacaagtattgtaaaacgga 26783739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 43750255 - 43750396
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| |||||| |||||||||| | ||| | ||||||||| ||  ||||||||||||| |||||||||||||||||||||    
T  43750255 atttattatttcattctattttttctctctcaacaataaatatgcaagag-tattattgacaagacaataattaatgttgcattgaaacttgaaagtgac 43750353  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtatt 151  Q
    || ||  | ||||| ||||||||||  ||||||||||||||||    
T  43750354 aagtattgagaaaccaaattattctaaaaaatggacaagtatt 43750396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 48820508 - 48820610
Alignment:
Q  60 gtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaac 158  Q
    |||||||||| ||  ||||||||||||| ||||||||||||||||||||||| ||  |||||||||||||||| || |||||||||||||||| ||||||    
T  48820508 gtattattgacaaaacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaattattttttaaaatggacaagtattatgaaac 48820607  T
Q  159 gga 161  Q
    |||    
T  48820608 gga 48820610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 11 - 139
Target Start/End: Complemental strand, 53559768 - 53559639
Alignment:
Q  11 tttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgaca 109  Q
    |||||||||| ||| |||||||| | ||||||||||||||||||||  | ||||||| |||| ||||| |||||||| |||||||||||||| |||||||    
T  53559768 tttattatttcattttattatttatttctctacaataaataagtaacag-tattattaataaatcaatgattaatgttgcattgaaacttgagagtgaca 53559670  T
Q  110 aataaagtgaaacaaaatta-ttcttcaaaa 139  Q
    | |||| ||||||||||||| ||||||||||    
T  53559669 agtaaattgaaacaaaattatttcttcaaaa 53559639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 162
Target Start/End: Complemental strand, 52009208 - 52009050
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||||||| ||||||||||||||||| ||||  | ||||||||| ||  |||||||||||| ||||| ||||||||||||||||    
T  52009208 atttattattttattctattatttatctctctacaataaataggtaa-tgttattattgacaagacaataattaatgttgcatcgaaacttgaaagtgac 52009110  T
Q  109 aaataaagtg------aaacaaaattattcttcaaaatggacaagtattgtgaaacggat 162  Q
    || |||  ||      |||||||||||||   |||||  |||||||||||||||||||||    
T  52009109 aagtaatatgattattaaacaaaattatttcccaaaagcgacaagtattgtgaaacggat 52009050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 23 - 168
Target Start/End: Complemental strand, 32835134 - 32834989
Alignment:
Q  23 ttctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaa 121  Q
    ||||||| ||| |||||||||||| ||||  |||||| ||||||||| ||  ||||| ||||||| |||||||||||||||| |||||| ||   |||||    
T  32835134 ttctattttttctctctctacaattaatatttaaggg-tattattgacaaaacaatacttaatgttgcattgaaacttgaaaatgacaagtactatgaaa 32835036  T
Q  122 caaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    | ||||||||||  | |||||||||||||| ||||||||| ||||||    
T  32835035 cgaaattattctctacaatggacaagtattatgaaacggagggagta 32834989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 22 - 127
Target Start/End: Original strand, 37293542 - 37293644
Alignment:
Q  22 attctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaaagtgacaaataaagtgaa 120  Q
    |||||||||||| ||||||||||||||||| |||| ||||| ||||||||| ||   |||||||| |||||||||||||||||| ||||| |||| ||||    
T  37293542 attctattatttctctctctacaataaataggtaa-gggtaatattgataaatc---aattaatgttgcattgaaacttgaaagggacaagtaaaatgaa 37293637  T
Q  121 acaaaat 127  Q
    |||||||    
T  37293638 acaaaat 37293644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 52805185 - 52805057
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| ||||||||  ||  ||||||| |||||||||||| | |||||||||| |||||||| ||||| |||| ||||||||||||||||    
T  52805185 atttattattttattatattatttccctgcctacaattaataagtaaggg-tgttattgataaatcaataataaatgttgcatcgaaacttgaaagtgac 52805087  T
Q  109 aaataaagtgaaacaaaattattcttcaaaa 139  Q
    || |||| | |||| |||||||||| |||||    
T  52805086 aagtaaaataaaac-aaattattctccaaaa 52805057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 158
Target Start/End: Complemental strand, 31874015 - 31873875
Alignment:
Q  15 ttatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaata 113  Q
    |||||| |||||||| ||  ||||||| |||||||||  |||||| |||| |||| ||  ||||||||||||| ||||||||||||||||| ||||| ||    
T  31874015 ttatttcattctatttttactctctctgcaataaatatataaggg-tatt-ttgacaagacaataattaatgttgcattgaaacttgaaagggacaagta 31873918  T
Q  114 aagtgaaacaaaattattcttcaaaatggacaagtattgtgaaac 158  Q
      |||||| |||||||||||  ||||||||||  |||||||||||    
T  31873917 ttgtgaaataaaattattctctaaaatggaca--tattgtgaaac 31873875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 421
Target Start/End: Complemental strand, 18355660 - 18355622
Alignment:
Q  383 agtctaagtagtagttactaaaccaattgagatccatat 421  Q
    ||||||||||||||||||| |||||||||||||||||||    
T  18355660 agtctaagtagtagttactgaaccaattgagatccatat 18355622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 19897095 - 19896937
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    ||||||||  |||||||||| ||||||||||||  || | || ||||||||  |||||  ||||||||||||  ||||||||||||| | ||| ||||||    
T  19897095 cccttactcttttattatttcattctattattt--ctttttataataaatagataagga-tattattgataaaccaataattaatgttgtattaaaactt 19896999  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    |||||  | || | |||| ||||||||||||| |||||||   ||| |||| ||||||||||    
T  19896998 gaaagaaagaagtgaagtaaaacaaaattatttttcaaaagcaacatgtatggtgaaacgga 19896937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 37293475 - 37293437
Alignment:
Q  130 ttcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||||||||||||||||||||||| ||||||    
T  37293475 ttcttcaaaatggacaagtattgtgaaacggagggagta 37293437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 107
Target Start/End: Original strand, 37781055 - 37781152
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaa-tgtgcattgaaacttgaaagtga 107  Q
    ||||||||||| |||||| ||||| | |||||||||||||||  ||| |||||||||||| ||  |||||||||| | || ||||||| ||||||||||    
T  37781055 atttattatttcattctagtatttctttctctacaataaatatttaa-gggtattattgacaaaccaataattaactttggattgaaatttgaaagtga 37781152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 87
Target Start/End: Original strand, 46188886 - 46188961
Alignment:
Q  11 tttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt 87  Q
    |||||||||| ||| |||||||| ||||||||||||||||||| || |  ||||||||| ||  |||||||||||||    
T  46188886 tttattatttcattatattatttctctctctacaataaataagcaa-gaatattattgacaaaccaataattaatgt 46188961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 48963239 - 48963361
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| | | ||||| |||||||||||  |||||  ||||||||| ||  ||||||||||||| |||||||||||| ||| |||     
T  48963239 atttattatttcattctatt-tatctctctttacaataaatatataagga-tattattgacaagacaataattaatgttgcattgaaacttaaaaatgat 48963336  T
Q  109 aaataaagtgaaacaaaattattct 133  Q
    |||||   ||||| |||||||||||    
T  48963337 aaatattatgaaataaaattattct 48963361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 1455245 - 1455186
Alignment:
Q  75 caataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattct 133  Q
    ||||||||||||| ||||||||| | ||||||||||| |||||| ||||||| |||||||    
T  1455245 caataattaatgttgcattgaaattggaaagtgacaagtaaagtaaaacaaatttattct 1455186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 109
Target Start/End: Original strand, 43159859 - 43159967
Alignment:
Q  2 ccttactaatttattatttaattctat-tatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaactt 99  Q
    ||||| ||||||| ||||| ||| ||| | ||||||||||| |||||||||  ||| ||||| ||||||||| |||| | |||||| |||||||||  ||    
T  43159859 ccttattaatttaatattttattttatatgtttttctctctgcaataaatatttaa-gggtaatattgataaatcaacatttaatgttgcattgaatttt 43159957  T
Q  100 gaaagtgaca 109  Q
    ||||||||||    
T  43159958 gaaagtgaca 43159967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 101 - 161
Target Start/End: Complemental strand, 40228278 - 40228218
Alignment:
Q  101 aaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    |||||||||| | | |||||| |||||| ||||||||||  ||||| ||||||||||||||    
T  40228278 aaagtgacaagtgatgtgaaataaaattgttcttcaaaaatgacaaatattgtgaaacgga 40228218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 108; Significance: 4e-54; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 19692833 - 19692999
Alignment:
Q  2 ccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttg 100  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||  ||||||||||||| |||||||||||||    
T  19692833 ccttactcatttattatttcattctattatttctctctctacaataaataagtaaggg-tgttattgataaaccaataattaatgttgcattgaaacttg 19692931  T
Q  101 aaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||| ||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||    
T  19692932 aaagtgacaagtaaagtgaaacaaaattattctctaaaatagacaagtattgtgatacggatggagta 19692999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 2 - 168
Target Start/End: Original strand, 19703418 - 19703584
Alignment:
Q  2 ccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttg 100  Q
    ||||||| ||||||||||| |||||||||||| ||||||||||||||||||||||||| | ||||||||||  ||||||||||||| |||||||||||||    
T  19703418 ccttactcatttattatttcattctattatttctctctctacaataaataagtaaggg-tgttattgataaaccaataattaatgttgcattgaaacttg 19703516  T
Q  101 aaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||| ||||||||||||||||||||||  ||||| |||||||||||||| ||||||||||||    
T  19703517 aaagtgacaagtaaagtgaaacaaaattattctctaaaatagacaagtattgtgatacggatggagta 19703584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 6129116 - 6128956
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| |||| ||||||| |||||||||||||||||  |||||| ||||||||||||  ||||||||||||| ||||||||||||    
T  6129116 cccttaatcatttattatttcattccattatttctctctctacaataaatagataaggg-tattattgataaaccaataattaatgttgcattgaaactt 6129018  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||||||||||| |||| |||||||||||||||||||||||  |||| |||||||||||||||    
T  6129017 gaaagtgacaagtaaaatgaaacaaaattattcttcaaaagcgacatgtattgtgaaacgga 6128956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 50767973 - 50768129
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| ||||||||||||| ||| |||| ||||||||||||||||||||| ||||||| ||||||||| ||  ||||||||||||| ||||||||||||    
T  50767973 cccttaataatttattatttcattttatt-tttttctctctacaataaatatgtaaggg-tattattgacaagacaataattaatgttgcattgaaactt 50768070  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaac 158  Q
    ||||||||||||||  ||||||||||||||||||  |||||||||||||||| ||||||    
T  50768071 gaaagtgacaaatattgtgaaacaaaattattctctaaaatggacaagtattatgaaac 50768129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 14261153 - 14261321
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| ||||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  14261153 cccttaataatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 14261251  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| ||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  14261252 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 14261321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 12071670 - 12071837
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| ||| |||| ||| ||||||||||||||||| | ||||| ||||||||| ||  ||| ||||||||| ||||||||||||    
T  12071670 cccttaatcatttattatttcattttattttttctctctctacaataaatatgcaaggg-tattattgacaagacaagaattaatgttgcattgaaactt 12071768  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  12071769 gaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 12071837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 20249172 - 20249021
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| ||||||||||||||||| ||||||| ||||||||| ||  ||||||||||| | ||||||||||||||||| |||    
T  20249172 atttattattttattctattttttctctctctacaataaatatgtaaggg-tattattgacaagacaataattaatattgcattgaaacttgaaagagac 20249074  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    |  ||  |||||||||||||||||| ||||||||||||||||| |||||||||    
T  20249073 aggtattgtgaaacaaaattattctccaaaatggacaagtattatgaaacgga 20249021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 22321435 - 22321268
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| ||| |||| ||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||||    
T  22321435 cccttaatcatttattatttcattttattttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaactt 22321337  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||| ||  ||||||||||||||||||  ||||| |||||||||| ||||||||| ||||||    
T  22321336 gaaagtgacaagtattgtgaaacaaaattattctctaaaatagacaagtattatgaaacggagggagta 22321268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 40122644 - 40122494
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||||||||||||    
T  40122644 atttattatttcattttatt-tttttctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaacttgaaagtgac 40122547  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    || ||  ||||||||||||||||||  |||||||||||||||| |||||||||    
T  40122546 aagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 40122494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 31 - 168
Target Start/End: Original strand, 21310561 - 21310698
Alignment:
Q  31 tttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaatta 129  Q
    ||||||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||||||||||||||| ||  ||||||||||||||    
T  21310561 tttttctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaagtattgtgaaacaaaatta 21310659  T
Q  130 ttcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||  |||||||||||||||| ||||||||| ||||||    
T  21310660 ttctctaaaatggacaagtattatgaaacggagggagta 21310698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 24706415 - 24706247
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  24706415 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 24706317  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| ||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  24706316 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 24706247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 25704760 - 25704928
Alignment:
Q  1 cccttactaatttattatttaattctattattttt-ctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| ||||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||| |||||||    
T  25704760 cccttaatcatttattatttcattttatttttttttctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcactgaaact 25704858  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  25704859 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 25704928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 21661694 - 21661537
Alignment:
Q  10 atttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  21661694 atttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaatacttaatgttgcattgaaacttgaaagtga 21661596  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggag 166  Q
     |||||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||    
T  21661595 taaatattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 21661537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 166
Target Start/End: Complemental strand, 21670458 - 21670301
Alignment:
Q  10 atttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  21670458 atttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaatacttaatgttgcattgaaacttgaaagtga 21670360  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggag 166  Q
     |||||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||    
T  21670359 taaatattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggag 21670301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 44568946 - 44569114
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||     
T  44568946 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaaca 44569044  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| ||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  44569045 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 44569114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 9 - 158
Target Start/End: Complemental strand, 18507424 - 18507276
Alignment:
Q  9 aatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    |||||||||||| ||| ||||||| | ||||||| ||||||||||||||   ||||||||| || |||||||||||||| ||||||||||||||||||||    
T  18507424 aatttattatttcattatattattct-ctctctataataaataagtaagaa-tattattgacaagtcaataattaatgttgcattgaaacttgaaagtga 18507327  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaac 158  Q
    |||  || ||||||||||||||| ||  ||||  |||||||||||||||||    
T  18507326 caagaaatgtgaaacaaaattatgctctaaaagcgacaagtattgtgaaac 18507276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 32543589 - 32543756
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| ||| |||||||| | | |||||||||||||  |||||| ||||| ||| ||  ||||||||||||| ||||| ||||||    
T  32543589 cccttaatcatttattatttcattttattatttctttttctacaataaatagataaggg-tattaatgacaaaccaataattaatgtcgcattaaaactt 32543687  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| |||| |||| |||||||||||||||||  ||||  ||||||||||||||||| || ||||||    
T  32543688 gaaagtaacaagtaaaatgaaacaaaattattctctaaaagcgacaagtattgtgaaacagaaggagta 32543756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 10 - 167
Target Start/End: Original strand, 21064878 - 21065037
Alignment:
Q  10 atttattatttaattctattattttt--ctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtg 106  Q
    ||||||||||| |||||||| |||||  |||||||||||||||| ||||| | ||||||||  ||  ||||||||||||| ||||||||| ||||||| |    
T  21064878 atttattatttcattctattttttttttctctctacaataaatatgtaagag-tattattgtcaagacaataattaatgttgcattgaaatttgaaagcg 21064976  T
Q  107 acaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagt 167  Q
    | || ||  ||||||||||||||||||  |||||| ||||||||| ||||||||| |||||    
T  21064977 ataagtattgtgaaacaaaattattctctaaaatgaacaagtattatgaaacggagggagt 21065037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 50839125 - 50839031
Alignment:
Q  75 caataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||||| |||||||||||||||| |||||| ||| |||||||||||||||||| |||||  |||||||||||||||| ||| ||||||    
T  50839125 caataattaatgttgcattgaaacttgaaaatgacaagtaatgtgaaacaaaattattctccaaaagcgacaagtattgtgaaatggagggagta 50839031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 37 - 158
Target Start/End: Original strand, 48652370 - 48652491
Alignment:
Q  37 tctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttc 135  Q
    |||||||  |||||| ||||||| ||||||| |||| |||||||||||||| ||||| |||||| ||||| |||| |||||||||||||||||||||| |    
T  48652370 tctctacgttaaataggtaaggg-tattattaataaatcaataattaatgtcgcattaaaactttaaagtaacaagtaaagtgaaacaaaattattctcc 48652468  T
Q  136 aaaatggacaagtattgtgaaac 158  Q
    ||||  ||||  |||||||||||    
T  48652469 aaaagcgacatatattgtgaaac 48652491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 94 - 161
Target Start/End: Complemental strand, 26676645 - 26676577
Alignment:
Q  94 aaacttgaaagtgacaaataaagtgaaacaaaattattctt--caaaatggacaagtattgtgaaacgga 161  Q
    ||||||||||||||||| |||||| ||||||||||||||||   ||||||| ||||||||||||||||||    
T  26676645 aaacttgaaagtgacaagtaaagtaaaacaaaattattcttaaaaaaatgg-caagtattgtgaaacgga 26676577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 10 - 151
Target Start/End: Original strand, 31892352 - 31892492
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgtg-cattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| ||||| | ||||||||| | ||||  ||||||||| ||  |||||||||||||  |||| |||||| ||||||||    
T  31892352 atttattatttcattctatt-tttctctctttgcaataaatatgcaaggc-tattattgacaagacaataattaatgttacattaaaacttaaaagtgac 31892449  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtatt 151  Q
    || ||  || ||||||||||||||| ||| || ||||||||||    
T  31892450 aagtattgtaaaacaaaattattctccaagatagacaagtatt 31892492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 87
Target Start/End: Complemental strand, 20714507 - 20714431
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt 87  Q
    ||||||||||| ||| |||||||| ||| |||| ||||||||| ||| |||||||||||| ||  |||||||||||||    
T  20714507 atttattatttcattatattatttatctttctaaaataaataaataa-gggtattattgacaaaccaataattaatgt 20714431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 34324750 - 34324653
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| ||| ||||||||||||||||| | || |||||||||||| ||   ||| ||||||| ||||||||||||    
T  34324750 cccttaatcatttattatttcattttattttttctctctctacaataaatatgcaa-gggtattattgacaagaaaatcattaatgttgcattgaaact 34324653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 102; Significance: 2e-50; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 734506 - 734338
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||||| ||||||||||| ||||||||||||||||||||| |||| ||| ||||| | ||||||||||||  ||||||||||||| | ||||||||||    
T  734506 cccttactcatttattatttcattctattatttttctctctataatatataggtaagag-tattattgataaaccaataattaatgttgtattgaaactt 734408  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||    
T  734407 gaaagtgacaagtaaagtgaaacaaaattattctccaaaatggacaagtattgtgaaacggtgggagtag 734338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 39070992 - 39071152
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||||| ||||||||||| |||||||||||| ||||||||||||||||| ||||| || |||||||||||  ||||||||||||| ||||||| ||||    
T  39070992 cccttactcatttattatttcattctattatttctctctctacaataaataggtaagtgg-attattgataaaccaataattaatgttgcattgatactt 39071090  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
     |||||||||| ||||||||||||||||||||||  ||||| ||||||||||||||| ||||    
T  39071091 aaaagtgacaagtaaagtgaaacaaaattattctcaaaaatagacaagtattgtgaatcgga 39071152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 25683387 - 25683228
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| ||||||||||||||||| ||||||| ||||||||| ||  ||||||||||||| |||||||||||||||||||||    
T  25683387 atttattattttattctattttttctctctctacaataaatatgtaaggg-tattattgacaaaacaataattaatgttgcattgaaacttgaaagtgac 25683289  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    || |    ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||    
T  25683288 aagttttatgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagtag 25683228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 11 - 168
Target Start/End: Complemental strand, 23097880 - 23097724
Alignment:
Q  11 tttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgaca 109  Q
    |||||||||| |||||||| ||||||||||||||||||||| ||||||| ||||||||| ||  ||||||||||| | |||||||||| ||||||| |||    
T  23097880 tttattattttattctatt-tttttctctctacaataaatatgtaaggg-tattattgacaagacaataattaatattgcattgaaacatgaaagtaaca 23097783  T
Q  110 aataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    | ||  |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  23097782 agtattgtgaaacaaaattattctccaaaatggacaagtattatgaaacggaaggagta 23097724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 37900783 - 37900623
Alignment:
Q  10 atttattatttaattctattatttttc--tctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtg 106  Q
    ||||||||||| |||||||| ||||||  ||||| ||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||||||||||    
T  37900783 atttattatttcattctattttttttcactctctgcaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaacttgaaagtg 37900685  T
Q  107 acaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||| ||  ||||||||||||||||||||||||| |||||||||| ||||||||| ||||||    
T  37900684 acaagtatcgtgaaacaaaattattcttcaaaatagacaagtattatgaaacggaaggagta 37900623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 40886778 - 40886609
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  40886778 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 40886680  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  40886679 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtag 40886609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 11319668 - 11319833
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||||| ||||||||||| ||||||||||||  |||||||||||||||| ||||| | ||||||| ||||  ||||||||||| | ||||| |||| |    
T  11319668 cccttactcatttattatttcattctattattt--ctctctacaataaataggtaagag-tattattaataaaccaataattaatattgcattaaaacct 11319764  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||| |||||||||||||||||||||||||  ||||| |||||||||| ||||||||||| ||||    
T  11319765 gaaagtgataaataaagtgaaacaaaattattctctaaaatagacaagtattatgaaacggatgaagta 11319833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 10285225 - 10285058
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||  ||||||||| ||  ||||||||||||| |||||||||||    
T  10285225 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaagg--tattattgacaagacaataattaatgttgcattgaaact 10285128  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||| ||||| |||||||||| ||||||||| ||||||    
T  10285127 tgaaagtgacaagtattgtgaaacaaaattattctttaaaatagacaagtattatgaaacggagggagta 10285058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 36561258 - 36561099
Alignment:
Q  10 atttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  36561258 atttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaatacttaatgttgcattgaaacttgaaagtga 36561160  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  36561159 caagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 36561099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 12807021 - 12806853
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||  ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  12807021 cccttaatcatttattatttcattttattttttcctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 12806923  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| ||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  12806922 tgaaagagacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 12806853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 10 - 162
Target Start/End: Original strand, 16054230 - 16054382
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||||||| |||||||||||||||||  |||||| ||||||||| ||   |||||||||||| |||||||||||||||||||||    
T  16054230 atttattattttattctattatttctctctctacaataaatagataaggg-tattattgacaaactaataattaatgttgcattgaaacttgaaagtgac 16054328  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggat 162  Q
    ||  |||||||| |||||||||||| |||||  |||| ||||| ||||| ||||    
T  16054329 aaccaaagtgaaccaaaattattctccaaaagcgacatgtattttgaaatggat 16054382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 13 - 168
Target Start/End: Complemental strand, 30720648 - 30720492
Alignment:
Q  13 tattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaa 110  Q
    |||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  |||||| |||||| |||||||||||||||||||||||    
T  30720648 tattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataactaatgttgcattgaaacttgaaagtgacaa 30720550  T
Q  111 ataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
     ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  30720549 gtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 30720492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 25773758 - 25773919
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| || | | ||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  25773758 cccttaatcatttattatttcattttatttttctctatctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 25773856  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||||||||| || ||  |||||||||| |||||||  |||||||||||||||| |||||||||    
T  25773857 tgaaagtgataagtattgtgaaacaaacttattctctaaaatggacaagtattatgaaacgga 25773919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 16983397 - 16983517
Alignment:
Q  31 tttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaatta 129  Q
    ||||||||||| ||||| ||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||| |||||||||| ||  ||||||||||||||    
T  16983397 tttttctctctgcaatagatatgcaaggg-tattattgaaaagacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaaatta 16983495  T
Q  130 ttcttcaaaatggacaagtatt 151  Q
    ||||||||||| ||||||||||    
T  16983496 ttcttcaaaatagacaagtatt 16983517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 60 - 133
Target Start/End: Complemental strand, 11795392 - 11795318
Alignment:
Q  60 gtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattct 133  Q
    |||||||||||||  | ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||    
T  11795392 gtattattgataaacctataattaatgttgcattgaaacttgaaagtgataaataaagtgaaacaaaattattct 11795318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 33 - 168
Target Start/End: Complemental strand, 1056758 - 1056625
Alignment:
Q  33 tttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattatt 131  Q
    |||||||||||||||||||| |||| | ||||||||| ||   |||||||||||| |||||||||||||||||||  | |  || ||||| |||||||||    
T  1056758 tttctctctacaataaataaataagag-tattattgacaaactaataattaatgttgcattgaaacttgaaagtg--atagtaattgaaataaaattatt 1056662  T
Q  132 cttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || |||||  |||||||||||||||||||| ||||||    
T  1056661 ctccaaaagtgacaagtattgtgaaacggagggagta 1056625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 87 - 168
Target Start/End: Original strand, 26168104 - 26168185
Alignment:
Q  87 tgcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||  ||||  |||| |||| |||||||||| ||||||    
T  26168104 tgcattgaaacttgaaagtgacaattaaagtgaaacaaaattattctctaaaaacgacatgtatcgtgaaacggaaggagta 26168185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 30403120 - 30402997
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    |||| |||||| ||| |||||||||||| ||| ||||||||   |||||| ||||||||| ||  ||||||||||| | | |||||||||| ||||||||    
T  30403120 atttgttatttcattttattatttttctttcttcaataaatggataaggg-tattattgacaaaccaataattaattttgtattgaaacttaaaagtgac 30403022  T
Q  109 aaataaagtgaaacaaaattattct 133  Q
    || |||| ||||| |||||||||||    
T  30403021 aagtaaaatgaaataaaattattct 30402997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 131
Target Start/End: Original strand, 15629253 - 15629376
Alignment:
Q  10 atttattatttaattctattatttttctctct--acaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaaagtg 106  Q
    ||||| ||||| ||| ||||||||||||||||  |||||||||| |||||   |||  ||||||| | ||||||||||| |||||||||| || ||| |     
T  15629253 atttactatttcattatattatttttctctctctacaataaataggtaagta-tatcgttgataaattaataattaatgctgcattgaaatttaaaaata 15629351  T
Q  107 acaaataaagtgaaacaaaattatt 131  Q
    |||| ||||||||||||||||||||    
T  15629352 acaagtaaagtgaaacaaaattatt 15629376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 105
Target Start/End: Complemental strand, 7277581 - 7277486
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaa-tgtgcattgaaacttgaaagt 105  Q
    ||||||||||| ||| |||| ||| ||| |||||||||||||||||| ||| |||||||| ||  |||||||||| | |||||||||| || |||||    
T  7277581 atttattatttcattatattttttctctatctacaataaataagtaa-gggcattattgacaagacaataattaattttgcattgaaatttaaaagt 7277486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 130 - 161
Target Start/End: Original strand, 734576 - 734607
Alignment:
Q  130 ttcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||||||||||||||||||||||||||||||||    
T  734576 ttcttcaaaatggacaagtattgtgaaacgga 734607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 168
Target Start/End: Complemental strand, 39070921 - 39070883
Alignment:
Q  130 ttcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||||||||||||||||||| ||||||    
T  39070921 ttcttcaaaatgaacaagtattgtgaaacggagggagta 39070883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 138
Target Start/End: Original strand, 11797663 - 11797798
Alignment:
Q  10 atttattatttaattctattatttttctct--ctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaaagtg 106  Q
    ||||||||||| ||| |||||||| ||| |  |||||||||||||| || |||||| ||||| ||   ||||||||||| || ||||||| |||||| ||    
T  11797663 atttattatttcattatattatttctctttatctacaataaataagcaa-gggtatcattgacaaactaataattaatgttgtattgaaatttgaaaatg 11797761  T
Q  107 ac-----aaataaagtgaaacaaaattattcttcaaa 138  Q
    ||     || |||||||||||||| ||||||||||||    
T  11797762 acaagtaaagtaaagtgaaacaaatttattcttcaaa 11797798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 42174315 - 42174263
Alignment:
Q  87 tgcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaa 139  Q
    ||||||||||  | |||||||||  |||| |||||||||||||||||||||||    
T  42174315 tgcattgaaatataaaagtgacaggtaaattgaaacaaaattattcttcaaaa 42174263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 26)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 8 - 161
Target Start/End: Complemental strand, 26628976 - 26628823
Alignment:
Q  8 taatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtg 106  Q
    ||||||||||||| |||||||||||| ||||||||||||||||| ||||||| |||||||||||| |||||||||||||| |||||||||||||||| ||    
T  26628976 taatttattatttcattctattatttctctctctacaataaataggtaaggg-tattattgataaatcaataattaatgttgcattgaaacttgaaaatg 26628878  T
Q  107 acaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||||||||||||||||||||||||||| |||||   ||| |||||||||||||||    
T  26628877 acaaataaagtgaaacaaaattattctccaaaagcaacatgtattgtgaaacgga 26628823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 35866732 - 35866890
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||||||| ||||||||||||| ||| ||||| | ||||||||||||  ||||||||||||| | |||||||||||||||||||    
T  35866732 atttattattttattctattatttctctctctacaatagatatgtaagag-tattattgataaaccaataattaatgttgaattgaaacttgaaagtgac 35866830  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  35866831 aagtaaaatgaaacaaaattattctccaaaatagacaagtattgtgaaacggatggagta 35866890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 28568037 - 28568195
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||| ||||||| |||||| |||||||||| ||||||| || |||||||||  ||||||||||||| |||||||||||| ||||||||    
T  28568037 atttattatttcattcaattatttctctctcaacaataaataggtaaggg-taatattgataaaccaataattaatgttgcattgaaacttcaaagtgac 28568135  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || |||| ||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||    
T  28568136 aagtaaaatgaaacaaaataattctccaaaatggacaagtattgtgaaatggagggagta 28568195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 28575630 - 28575788
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||| ||||||| |||||| |||||||||| ||||||| || |||||||||  ||||||||||||| |||||||||||| ||||||||    
T  28575630 atttattatttcattcaattatttctctctcaacaataaataggtaaggg-taatattgataaaccaataattaatgttgcattgaaacttcaaagtgac 28575728  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || |||| ||||||||||| ||||| ||||||||||||||||||||||| ||| ||||||    
T  28575729 aagtaaaatgaaacaaaataattctccaaaatggacaagtattgtgaaatggagggagta 28575788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 27035114 - 27035265
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| |||||||||| |||||| ||||||| ||||||||| ||  ||||||||||||| |||||||||||||||||||||    
T  27035114 atttattatttcattctattttttctctctctacagtaaatatgtaaggg-tattattgacaagacaataattaatgttgcattgaaacttgaaagtgac 27035212  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    || ||  |||||||||||||||||| ||||||| ||||||||| |||||||||    
T  27035213 aagtattgtgaaacaaaattattctccaaaatgaacaagtattatgaaacgga 27035265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 28562531 - 28562698
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||||| |||||| |||| |||| ||||||| |||||| | |||||||| ||||| | || |||||||||  ||||||||||||| ||||||||||||    
T  28562531 cccttactcatttatgatttcattcaattatttctctctcaaaaataaataggtaagag-taatattgataaaccaataattaatgttgcattgaaactt 28562629  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||| |||| ||||||||||| ||||||||||||||| ||||||||||| ||||| ||||||    
T  28562630 gaaagtgacaagtaaaatgaaacaaaataattcttcaaaatggataagtattgtgagacggagggagta 28562698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 2540099 - 2539930
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctct--acaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaac 97  Q
    |||||| | ||||||||||| ||| |||| |||||||||||  |||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||    
T  2540099 cccttaatcatttattatttcattttattttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaac 2540001  T
Q  98 ttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||||| ||  ||||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  2540000 ttgaaagtgacaagtattgtgaaacaaaattattctttaaaatggacaagtattatgaaacggaaggagta 2539930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 7147022 - 7147191
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  7147022 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 7147120  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  7147121 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtag 7147191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 40058471 - 40058302
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  40058471 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 40058373  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  40058372 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtag 40058302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 11174391 - 11174223
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  11174391 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 11174293  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||| |||||| ||||||||| ||||||||| ||||||    
T  11174292 tgaaagtgacaagtattgtgaaacaaaattattctttaaaatgaacaagtattatgaaacggagggagta 11174223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 40918899 - 40918731
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  40918899 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 40918801  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  40918800 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 40918731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 30999691 - 30999524
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| ||| |||| ||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||||    
T  30999691 cccttaatcatttattatttcattttattttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaactt 30999593  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| |||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  30999592 gaaagtaacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 30999524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 11646493 - 11646325
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| || | |||| ||||||||||||||||| | ||||| ||||||||| || |||||||||||||| |||||||||||    
T  11646493 cccttaatcatttattatttcattttacttttttctctctctacaataaatatgcaaggg-tattattgacaagtcaataattaatgttgcattgaaact 11646395  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||   |||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  11646394 tgaaagtgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 11646325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 37345680 - 37345848
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  37345680 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 37345778  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||| |||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  37345779 tgaaaatgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggaaggagta 37345848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 43275567 - 43275399
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||   |||||||||||| |||||||||||    
T  43275567 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagataataattaatgttgcattgaaact 43275469  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  43275468 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 43275399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 20546432 - 20546310
Alignment:
Q  29 tatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaat 127  Q
    ||||||| ||||||||||||||| ||||||| ||||||||| ||  ||||||||||||| |||||||||| |||||||||||| ||  ||||||||||||    
T  20546432 tatttttttctctacaataaatatgtaaggg-tattattgacaagacaataattaatgttgcattgaaacctgaaagtgacaagtattgtgaaacaaaat 20546334  T
Q  128 tattcttcaaaatggacaagtatt 151  Q
    ||||||||||||||||||||||||    
T  20546333 tattcttcaaaatggacaagtatt 20546310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 3585595 - 3585728
Alignment:
Q  35 tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattct 133  Q
    ||||||||||||||||| | ||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||| ||   |||||||||||||||||    
T  3585595 tctctctacaataaatatgcaaggg-tattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattct 3585693  T
Q  134 tcaaaatggacaagtattgtgaaacggatggagta 168  Q
      ||||| |||||||||| ||||||||||||||||    
T  3585694 ctaaaatagacaagtattatgaaacggatggagta 3585728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 36068224 - 36068357
Alignment:
Q  35 tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattct 133  Q
    ||||||||||||||||| | ||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||| ||   |||||||||||||||||    
T  36068224 tctctctacaataaatatgcaaggg-tattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattct 36068322  T
Q  134 tcaaaatggacaagtattgtgaaacggatggagta 168  Q
      |||||||||||||||| ||||||||| ||||||    
T  36068323 ctaaaatggacaagtattatgaaacggagggagta 36068357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 33 - 157
Target Start/End: Complemental strand, 27564002 - 27563878
Alignment:
Q  33 tttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattatt 131  Q
    ||||||||||||||||||| ||||||| ||||||||| || |||||||||||||| ||||||||||||||||||||||| |||  |||||||||||| ||    
T  27564002 tttctctctacaataaataggtaaggg-tattattgacaagtcaataattaatgttgcattgaaacttgaaagtgacaagtaatatgaaacaaaattgtt 27563904  T
Q  132 cttcaaaatggacaagtattgtgaaa 157  Q
    || |||||  ||||||||| ||||||    
T  27563903 ctccaaaagcgacaagtatcgtgaaa 27563878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 36 - 168
Target Start/End: Complemental strand, 45400902 - 45400770
Alignment:
Q  36 ctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattctt 134  Q
    ||||||||||||||||||||||   |||||||||||| | |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||     
T  45400902 ctctctacaataaataagtaagaa-tattattgataaattaataattaatgttgcattgaaatttaaaagtgacaaataaagtgaaacaaaattattctc 45400804  T
Q  135 caaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||  |||  ||||| ||||||||| ||||||    
T  45400803 caaaaacgacttgtattatgaaacggagggagta 45400770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 30906847 - 30906705
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaat-gtgcattgaaacttgaaagtgac 108  Q
    |||||||||||||||||||||||| || | |||||| |||||||||| || ||||||| | |||||||||||||||  |||||| ||| || ||||| ||    
T  30906847 atttattatttaattctattatttctcacactacaacaaataagtaa-ggatattattaacaattcaataattaatattgcattaaaatttaaaagtaac 30906749  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattg 152  Q
    || ||| || ||| |||||||||||||||||  |||||||||||    
T  30906748 aagtaatgtaaaataaaattattcttcaaaaacgacaagtattg 30906705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 13881122 - 13880963
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| ||| ||||| || |||||||||||||||| ||||||   ||||||| | || |||||||||||| | ||||||||||||    
T  13881122 cccttaatcatttattatttcattatattagttctctctctacaataaattagtaagat-tattattaacaaatcaataattaatattgcattgaaactt 13881024  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||||||||||| |||  ||||||||||||||||  ||||| |  ||| ||||||||||||||    
T  13881023 gaaagtgacaagtaatttgaaacaaaattattcaccaaaa-gcgcaaatattgtgaaacgga 13880963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 58 - 155
Target Start/End: Complemental strand, 10180979 - 10180881
Alignment:
Q  58 gggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtga 155  Q
    |||||||||||| || |  |||| |||||| ||||||||||||||||||||||| ||| ||||||||||||| |||| |||||  || |||||||||||    
T  10180979 gggtattattgacaaattcataactaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattgttctccaaaagtgataagtattgtga 10180881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 37510468 - 37510519
Alignment:
Q  89 cattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaat 140  Q
    ||||||||||| ||||||| || |||| |||||||||||||||||| |||||    
T  37510468 cattgaaacttaaaagtgataagtaaaatgaaacaaaattattctttaaaat 37510519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 130 - 166
Target Start/End: Complemental strand, 35866652 - 35866616
Alignment:
Q  130 ttcttcaaaatggacaagtattgtgaaacggatggag 166  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  35866652 ttctttaaaatggacaagtattgtgaaacggaaggag 35866616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 39151601 - 39151665
Alignment:
Q  97 cttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||||||| |||||| ||| || ||||||||| |||||||||||  || |||||| ||||||||||    
T  39151601 cttgaaaatgacaagtaatgtaaaacaaaatcattcttcaaaagtgataagtatcgtgaaacgga 39151665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 2e-47; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 51064921 - 51064754
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    ||||||||  |||||||||| ||| |||||||| ||||||||||||||||| ||||||| ||||||||||||   ||||||||| || ||||||||||||    
T  51064921 cccttactcgtttattatttcattatattatttctctctctacaataaataggtaaggg-tattattgataaactaataattaacgttgcattgaaactt 51064823  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| || ||||||    
T  51064822 gaaagtgacaaataaagtgaaacaaaattattctctaaaatggacaagtattgtgaaacagacggagta 51064754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 23526358 - 23526516
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| | ||||||||||||||| ||||||| ||||||||| ||  ||||||||||||| |||||||||||||||||||||    
T  23526358 atttattatttcattctattttttctatctctacaataaatatgtaaggg-tattattgacaagacaataattaatgttgcattgaaacttgaaagtgac 23526456  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || ||  |||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  23526457 aagtattgtgaaacaaaattattcttcaaaatggacaagtattatgaaacggagggagta 23526516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 18396817 - 18396971
Alignment:
Q  14 attatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaat 112  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||  |||||||| || |||||||||||||| |||||||||||||||||||||||||    
T  18396817 attatttcattctattatttctctctctacaataaataagtaaggga-attattgaaaagtcaataattaatgttgcattgaaacttgaaagtgacaaat 18396915  T
Q  113 aaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
     | || ||||||||||||||| |||||   ||||||||||||||| ||| ||||||    
T  18396916 tatgtaaaacaaaattattctccaaaagcaacaagtattgtgaaatggagggagta 18396971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 2 - 168
Target Start/End: Complemental strand, 34458890 - 34458724
Alignment:
Q  2 ccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttg 100  Q
    ||||||||||||||||||| |||||||||||| |||||||| ||| |||| ||||||| |||||| | |||  ||||||||||||| |||| ||||||||    
T  34458890 ccttactaatttattatttcattctattatttctctctctataatgaatatgtaaggg-tattatcggtaaaccaataattaatgttgcatcgaaacttg 34458792  T
Q  101 aaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||| |||||||||||||||||||||| |||||  ||||  |||||||||||||| ||||||    
T  34458791 aaagtgacaagtaaagtgaaacaaaattattctccaaaagcgacatatattgtgaaacggaaggagta 34458724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 10 - 169
Target Start/End: Complemental strand, 31003945 - 31003786
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    |||||||||||||||||||||||| ||||||||||||||||| ||||||| |||||| || ||  ||| ||||||||| ||||||||||||||||||| |    
T  31003945 atttattatttaattctattatttctctctctacaataaataggtaaggg-tattatggacaaaccaacaattaatgttgcattgaaacttgaaagtggc 31003847  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    || ||| |||||||||||||||||| |||||  || |||||||||||||| || |||||||    
T  31003846 aagtaatgtgaaacaaaattattctccaaaagcgataagtattgtgaaacagagggagtag 31003786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 40783825 - 40783657
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  40783825 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 40783727  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  40783726 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 40783657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 26 - 160
Target Start/End: Complemental strand, 40261427 - 40261293
Alignment:
Q  26 tattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaa 124  Q
    |||||||| ||||||||||||||||| ||||||| ||||||||| ||  ||||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  40261427 tattatttctctctctacaataaatatgtaaggg-tattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaa 40261329  T
Q  125 aattattcttcaaaatggacaagtattgtgaaacgg 160  Q
    |||||||||||||||  ||||  |||||||||||||    
T  40261328 aattattcttcaaaagcgacatatattgtgaaacgg 40261293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 284477 - 284610
Alignment:
Q  35 tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattct 133  Q
    ||||||||||||||||| | ||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||| ||   |||||||||||||||||    
T  284477 tctctctacaataaatatgcaaggg-tattattgataagtcaataattaatgttgcattgaaacttgaaagtgacaagtattttgaaacaaaattattct 284575  T
Q  134 tcaaaatggacaagtattgtgaaacggatggagta 168  Q
      |||||||||||||||| ||||||||| ||||||    
T  284576 ctaaaatggacaagtattatgaaacggagggagta 284610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 23045447 - 23045278
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  23045447 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 23045349  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    |||||| ||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  23045348 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtag 23045278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 47038020 - 47037851
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  47038020 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 47037922  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    |||||||||||| ||  || |||||||||||||||| ||||| |||||||||| ||||||||| |||||||    
T  47037921 tgaaagtgacaagtattgtaaaacaaaattattctttaaaatagacaagtattatgaaacggagggagtag 47037851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 321744 - 321903
Alignment:
Q  10 atttattatttaattctattattttt-ctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    ||||||||||| ||| |||| ||||| |||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||||||||||||    
T  321744 atttattatttcattttatttttttttctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaacttgaaagtga 321842  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||| ||  ||||||||||| ||||||  |||||||||||||||| ||||||||| ||||||    
T  321843 caagtattgtgaaacaaaaatattctctaaaatggacaagtattatgaaacggagggagta 321903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 24876680 - 24876831
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    |||||| |||| ||||||||||||  ||| ||| |||||||||||||| | ||||||||| ||  ||||||||||||| ||||||| |||||||||||||    
T  24876680 atttatcatttcattctattatttcactcactagaataaataagtaagag-tattattgacaaaccaataattaatgtcgcattgacacttgaaagtgac 24876778  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    || |||| ||||||||||||||||| |||||  |||||||||||||| |||||    
T  24876779 aagtaaaatgaaacaaaattattctccaaaaacgacaagtattgtgagacgga 24876831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 27143170 - 27143014
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||||||| |||||||||| |||||| ||||||| ||||||||| ||  ||||||||||||| | ||||||||||||  |||||    
T  27143170 atttattatttcattctattatttctctctctacagtaaataggtaaggg-tattattgacaaaccaataattaatgttgtattgaaacttga--gtgac 27143074  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || ||| |||||||||||||||||| |||||  ||||| |||| |||| |||||||||||    
T  27143073 aagtaatgtgaaacaaaattattctccaaaagcgacaattattatgaagcggatggagta 27143014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 33082863 - 33083021
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| ||| |||||||||||||  |||||| ||||||||| ||  ||||||||||| | ||||||||| ||||||| |||    
T  33082863 atttattattttattctattttttctctttctacaataaatatttaaggg-tattattgagaagacaataattaatattgcattgaaatttgaaagagac 33082961  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |  ||  ||||||||||||||||||| |||||||||||||||| ||||||||| ||||||    
T  33082962 atgtattgtgaaacaaaattattctttaaaatggacaagtattatgaaacggagggagta 33083021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 24772064 - 24771906
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| ||| |||||||||||||  |||||  ||||||||| ||  ||||||||||| | ||||||||||||||||| |||    
T  24772064 atttattattttattctattttttctctttctacaataaatatttaaggc-tattattgaaaaaacaataattaatattgcattgaaacttgaaagagac 24771966  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |  ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  24771965 atgtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 24771906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 161
Target Start/End: Original strand, 46771755 - 46771908
Alignment:
Q  10 atttattatttaattctattatttttctctct--acaataaataagtaaggggtattattgataattcaataattaatgtg-cattgaaacttgaaagtg 106  Q
    ||||||| ||| |||||||| |||||||||||  |||||||||| ||||| | ||||||||| ||   ||||||||||||  ||||||||||||||||||    
T  46771755 atttattttttcattctattttttttctctctctacaataaatatgtaagag-tattattgacaagaaaataattaatgttacattgaaacttgaaagtg 46771853  T
Q  107 acaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    | || ||  |||||||||||||||||||||||||| ||||||||| |||||||||    
T  46771854 ataagtattgtgaaacaaaattattcttcaaaatgaacaagtattatgaaacgga 46771908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 15 - 168
Target Start/End: Complemental strand, 23167004 - 23166851
Alignment:
Q  15 ttatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaata 113  Q
    |||||| ||| ||||||||  ||||||| ||||||||  |||| | ||||||||| || |||||||||||||| | |||||||||||||||| | |||||    
T  23167004 ttattttattttattatttccctctctaaaataaatagataagag-tattattgacaaatcaataattaatgttgtattgaaacttgaaagtaataaata 23166906  T
Q  114 aagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    | ||||||||||||||||||  ||||  ||| ||||||||||||||||| |||||    
T  23166905 atgtgaaacaaaattattctctaaaagcgacgagtattgtgaaacggatagagta 23166851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 1837997 - 1837827
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctct--acaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaac 97  Q
    |||||||  ||||||||||| ||  |||||||| |||||||  ||||||||||  | |||| |||||||||||| ||||||||||||| |||||||||||    
T  1837997 cccttacccatttattattttatcatattatttctctctctttacaataaatagattaggg-tattattgataaatcaataattaatgttgcattgaaac 1837899  T
Q  98 ttgaaagtgacaaataa---agtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || |||||||||| |||   | |||||||||||||||||||||||   ||| ||||| ||||||||||||||||    
T  1837898 ttaaaagtgacaagtaaattattgaaacaaaattattcttcaaaa--aacatgtattatgaaacggatggagta 1837827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 26 - 161
Target Start/End: Original strand, 25929233 - 25929368
Alignment:
Q  26 tattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaa 124  Q
    |||||||| ||| | |||||||||||  |||||| |||||||||||| |||||| ||||||| || |||||||||||||| | ||| | || ||||||||    
T  25929233 tattatttctctttatacaataaatagataaggg-tattattgataaatcaatatttaatgttgcgttgaaacttgaaaggggcaagtgaaatgaaacaa 25929331  T
Q  125 aattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    |||||||||| ||||  ||||||||||||||||||||    
T  25929332 aattattctttaaaagcgacaagtattgtgaaacgga 25929368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 35 - 161
Target Start/End: Complemental strand, 27211088 - 27210962
Alignment:
Q  35 tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattct 133  Q
    ||||||| ||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||| || ||||||| ||  ||||||||||||||||||    
T  27211088 tctctctgcaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaacttaaatgtgacaagtattgtgaaacaaaattattct 27210990  T
Q  134 tcaaaatggacaagtattgtgaaacgga 161  Q
    | ||||||||||| |||| |||||||||    
T  27210989 taaaaatggacaaatattatgaaacgga 27210962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 168
Target Start/End: Complemental strand, 40562380 - 40562286
Alignment:
Q  75 caataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||||| ||||||||||||||||||||||| ||  || ||||||||| ||||||||||||||||||||||| | ||||||||| ||||    
T  40562380 caataattaatgttgcattgaaacttgaaagtgacaagtattgtaaaacaaaatcattcttcaaaatggacaagtattataaaacggatgaagta 40562286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 33 - 131
Target Start/End: Complemental strand, 40052599 - 40052501
Alignment:
Q  33 tttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattatt 131  Q
    |||||||||| |||||||||| || |  ||||||||| ||  ||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||    
T  40052599 tttctctctataataaataagcaacga-tattattgacaaaccaataattaatgttgcattgaaacttgaaagtgacaagtaatgtgaaacaaaattatt 40052501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 87 - 161
Target Start/End: Original strand, 14925658 - 14925732
Alignment:
Q  87 tgcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    |||||||||||||||||  ||||| ||||||||||||||||||| ||  ||||  ||||||||||||||||||||    
T  14925658 tgcattgaaacttgaaaacgacaagtaaagtgaaacaaaattatgctctaaaaacgacaagtattgtgaaacgga 14925732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 10 - 163
Target Start/End: Complemental strand, 31061613 - 31061461
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| ||||||||    ||||||| |||||| || |||| ||||||||  ||  ||||||||||||| |||||||||||||| ||||||    
T  31061613 atttattatttcattatattattt----ctctacagtaaatatgtgaggg-tattattgtcaaaccaataattaatgttgcattgaaacttgagagtgac 31061519  T
Q  109 aaata---aagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatg 163  Q
    || ||   | |||||| ||||||||| | |||||  ||||||||||||||||||||||    
T  31061518 aagtagtaatgtgaaataaaattattttccaaaagtgacaagtattgtgaaacggatg 31061461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 59
Target Start/End: Complemental strand, 14351919 - 14351870
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggg 59  Q
    ||||| |||||  |||||||||||||||||||||||||||||||||||||    
T  14351919 atttaatatttcgttctattatttttctctctacaataaataagtaaggg 14351870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 17 - 99
Target Start/End: Original strand, 3657200 - 3657282
Alignment:
Q  17 atttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaactt 99  Q
    |||| |||||||||||  ||||||||||||||||| ||||   |||||||||| ||  |||||||||||| |||||||||||||    
T  3657200 atttcattctattattcctctctctacaataaataggtaa-aagtattattgacaaaccaataattaatgttgcattgaaactt 3657282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 168
Target Start/End: Original strand, 51064995 - 51065033
Alignment:
Q  130 ttcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||| |||||||||||||||||||||||||| ||||||    
T  51064995 ttctttaaaatggacaagtattgtgaaacggagggagta 51065033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 9 - 87
Target Start/End: Original strand, 52478083 - 52478160
Alignment:
Q  9 aatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt 87  Q
    ||||||| |||| ||||||||||||  |||||||| |||||||  ||| || ||||||||| || ||||||||||||||    
T  52478083 aatttatcatttcattctattatttccctctctaccataaatagataa-ggatattattgacaaatcaataattaatgt 52478160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 131
Target Start/End: Complemental strand, 17581110 - 17581069
Alignment:
Q  90 attgaaacttgaaagtgacaaataaagtgaaacaaaattatt 131  Q
    ||||||| |||||| ||||||||||||| |||||||||||||    
T  17581110 attgaaatttgaaaatgacaaataaagtaaaacaaaattatt 17581069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 12 - 168
Target Start/End: Original strand, 13757328 - 13757484
Alignment:
Q  12 ttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaa 110  Q
    ||||||||| ||| |||| ||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||||||||||||||    
T  13757328 ttattatttcattttattttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaacttgaaagtgacaa 13757426  T
Q  111 ataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
     ||  ||||||||||||||||||  |||||||||||||||| ||||||||||||||||    
T  13757427 gtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggatggagta 13757484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 8235733 - 8235902
Alignment:
Q  1 cccttactaatttattatttaattctattattttt--ctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaac 97  Q
    |||||| | ||||||||||| |||||||| |||||  |||||||||||||||| ||||||| ||||||||||||  ||||||||||| | ||||||||||    
T  8235733 cccttaatcatttattatttcattctattttttttatctctctacaataaatatgtaaggg-tattattgataagacaataattaatattgcattgaaac 8235831  T
Q  98 ttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||||| ||  ||||||||||||||||||  ||||| |||||||||| ||||||||||| ||||    
T  8235832 ttgaaagtgacaagtattgtgaaacaaaattattctctaaaatagacaagtattatgaaacggatgaagta 8235902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 17942563 - 17942720
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| ||||||| ||||||||| ||  ||||||||||||| |||||||||||||||||||||    
T  17942563 atttattatttcattttatt-tttttctctctacaataaatatgtaaggg-tattattgacaaaacaataattaatgttgcattgaaacttgaaagtgac 17942660  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || ||   | ||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  17942661 aagtattataaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 17942720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 15064853 - 15064695
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| |||| ||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| | |||||||||||||||||||    
T  15064853 atttattatttgattatattttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgtattgaaacttgaaagtgac 15064755  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || ||   ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  15064754 aagtattatgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 15064695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 8626591 - 8626759
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  8626591 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 8626689  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| ||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  8626690 tgaaagggacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 8626759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 1605688 - 1605855
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| ||| |||| ||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| | ||||||| ||    
T  1605688 cccttaatcatttattatttcattttattttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgtattgaaattt 1605786  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  1605787 gaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 1605855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 7761408 - 7761577
Alignment:
Q  1 cccttactaatttattatttaattctattatttt--tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaac 97  Q
    |||||| | ||||||||||| ||| |||| ||||  ||||||||||||||||| | ||||| ||||||||| ||   |||||||||| | ||||||||||    
T  7761408 cccttaatcatttattatttcattttatttttttcctctctctacaataaatatgcaaggg-tattattgacaaaataataattaatattgcattgaaac 7761506  T
Q  98 ttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||||||||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  7761507 ttgaaagtgacaaatattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 7761577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 20398398 - 20398238
Alignment:
Q  10 atttattatttaattctattatttttctctct--acaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtg 106  Q
    ||||||||||| ||| ||||||||||||||||  | |||||||| ||||||| ||||||||| |||| |||||||||||| ||||| |||||||||||||    
T  20398398 atttattattttattatattatttttctctctgtataataaataggtaaggg-tattattgacaatttaataattaatgttgcattaaaacttgaaagtg 20398300  T
Q  107 acaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
     ||| |||||||||||||||||||| | |||||  |||| ||||||||||||| | ||||||    
T  20398299 gcaagtaaagtgaaacaaaattattttccaaaagtgacatgtattgtgaaacgaagggagta 20398238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 29260301 - 29260470
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| ||||||| ||||||||| ||  || |||||||||| |||||||||||    
T  29260301 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgtaaggg-tattattgacaagacagtaattaatgttgcattgaaact 29260399  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    ||||| |||||| ||   |||||||||||||||||  |||||||||||||||| ||||||||| |||||||    
T  29260400 tgaaaatgacaagtattttgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagtag 29260470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 4129545 - 4129703
Alignment:
Q  10 atttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  4129545 atttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaata-ttaatgttgcattgaaacttgaaagtga 4129642  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||| ||  |||||||||||||||| |  |||||||||||||||| ||||||||| ||||||    
T  4129643 caagtattgtgaaacaaaattattttctaaaatggacaagtattatgaaacggagggagta 4129703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 26860883 - 26861041
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||||||| |||||||  |||||||| |||| || ||||||||| || |||||||| ||||| | |||||||| ||||| ||||    
T  26860883 atttattattttattctattatttctctctctgtaataaataggtaaagg-tattattgacaaatcaataatcaatgttgtattgaaacatgaaaatgac 26860981  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || |||||||||||||| ||||||| |||||  |||| |||||||||||| ||| |||||    
T  26860982 aagtaaagtgaaacaaacttattctccaaaaatgacatgtattgtgaaaccgattgagta 26861041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 30734651 - 30734494
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||||||   |||||||||||| ||||||||| |    
T  30734651 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgataagataataattaatgttgcattgaaatt 30734553  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaa 157  Q
    ||||| |||||| ||  || ||||||||||||| | ||||||||||||||||| |||||    
T  30734552 tgaaaatgacaactattgtaaaacaaaattattttccaaaatggacaagtattatgaaa 30734494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 31559904 - 31559738
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| ||| | || ||| ||||||||||||||||| | ||||| ||||||| | ||  ||||||||||||| ||||||||||||    
T  31559904 cccttaatcatttattatttcattttttt-tttctctctctacaataaatatgcaaggg-tattattaacaagacaataattaatgttgcattgaaactt 31559807  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||| |||| ||  || ||| |||||||||||  |||||||| ||||||| ||||||||| ||||||    
T  31559806 gaaagtaacaagtattgtaaaataaaattattctctaaaatggagaagtattatgaaacggagggagta 31559738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 1814762 - 1814861
Alignment:
Q  61 tattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacg 159  Q
    ||||||||| ||  ||||||| ||||| |||||| || || |||||||||| |||||||||| |||||||||||||||||  |||| |||||||||||||    
T  1814762 tattattgacaaaccaataatcaatgttgcattggaaattaaaagtgacaagtaaagtgaaataaaattattcttcaaaagtgacatgtattgtgaaacg 1814861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 39 - 131
Target Start/End: Original strand, 3798247 - 3798339
Alignment:
Q  39 tctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattatt 131  Q
    |||| |||||||| ||||||| ||||||||||||    ||||||||||| ||||| ||||||||||||||||| ||||||||||||||| ||||    
T  3798247 tctataataaataggtaaggg-tattattgataaactcataattaatgttgcattaaaacttgaaagtgacaagtaaagtgaaacaaaactatt 3798339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 79
Target Start/End: Complemental strand, 11370644 - 11370576
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaata 79  Q
    ||||||||||  |||| ||||||||||||||||||||||||| |||| || |||||||||||| ||||||    
T  11370644 atttattattccattcgattatttttctctctacaataaataggtaa-ggatattattgataaatcaata 11370576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 83
Target Start/End: Original strand, 14287107 - 14287178
Alignment:
Q  11 tttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataatta 83  Q
    |||||||||| ||| |||||||| |||||||||||||| || |||| | ||||||| ||||| ||||||||||    
T  14287107 tttattatttcattttattatttatctctctacaataactaggtaa-gagtattatggataaatcaataatta 14287178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 139
Target Start/End: Original strand, 22784790 - 22784900
Alignment:
Q  29 tatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaaagtgacaaataaagtgaaacaaaat 127  Q
    |||||||||||| ||||||||||||||| || || ||||| |||  ||| | |||||| |||||||||  ||||||||||||  ||||  |||||||||     
T  22784790 tatttttctctccacaataaataagtaa-ggataatattggtaaaacaacatttaatgttgcattgaactttgaaagtgacagttaaatagaaacaaaaa 22784888  T
Q  128 tattcttcaaaa 139  Q
     |||||||||||    
T  22784889 aattcttcaaaa 22784900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 81; Significance: 6e-38; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 58 - 169
Target Start/End: Complemental strand, 40757022 - 40756910
Alignment:
Q  58 gggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaa 156  Q
    |||||||||||||||  ||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||| ||||    
T  40757022 gggtattattgataaaccaataattaatgttgcattgaaacttgaaagtgacaactaaagtgaaacaaaattattctccaaaatggacaagtattatgaa 40756923  T
Q  157 acggatggagtag 169  Q
    ||||| |||||||    
T  40756922 acggagggagtag 40756910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 161
Target Start/End: Original strand, 3519017 - 3519177
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgtg-cattgaaactt 99  Q
    |||||| ||||||||||||| ||| |||| ||| ||||||||||||||||| | ||||| ||||||||| ||  |||||||||||||  |||||||||||    
T  3519017 cccttaataatttattatttcattttattttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttacattgaaactt 3519115  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||||||||||| ||  ||||||||||||||||||  |||||||||||||||| |||||||||    
T  3519116 gaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 3519177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 22388303 - 22388138
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| ||| ||||  |||||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||||    
T  22388303 cccttaatcatttattatttcattttatt--ttttctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaactt 22388207  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  22388206 gaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 22388138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 12969898 - 12969740
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| |||||||||||||||||  |||||| ||||||||| ||  ||||||||||| | ||||||||||||||||| |||    
T  12969898 atttattattttattctattttttctctctctacaataaatatttaaggg-tattattgagaagacaataattaatattgcattgaaacttgaaagagac 12969800  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |  ||  |||||||||||||||||| ||||||||||||||||| ||||||||| ||||||    
T  12969799 atgtattgtgaaacaaaattattctccaaaatggacaagtattatgaaacggagggagta 12969740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 23366898 - 23367066
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| | |||||||||    
T  23366898 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgtattgaaact 23366996  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  23366997 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 23367066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 1102621 - 1102778
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| |||| ||||||||||||||||||||| | ||||| | ||||||| ||  ||||||||||||| |||||||||||||||||||||    
T  1102621 atttattatttcattttatt-tttttctctctacaataaatatgcaaggg-tgttattgacaagacaataattaatgttgcattgaaacttgaaagtgac 1102718  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
     | ||  ||||||||||||||||||   ||||||||||||||| ||||||||| ||||||    
T  1102719 gagtattgtgaaacaaaattattctctcaaatggacaagtattatgaaacggagggagta 1102778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 39938279 - 39938447
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||| |||||    
T  39938279 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattaaaact 39938377  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    | |||||||||| ||  ||||||||||||||||||  |||||||||||||||| | ||||||| ||||||    
T  39938378 taaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattataaaacggagggagta 39938447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 168
Target Start/End: Complemental strand, 39562046 - 39561895
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||  ||||||||||||  |||||||||||||||||||||||| ||||||||| ||  ||||||||||||| ||||||||| || ||||||||    
T  39562046 atttattattgtattctattattt--ctctctacaataaataagtaaggg-tattattgacaaaccaataattaatgttgcattgaaatttaaaagtgac 39561950  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||     |||||||||||||||||| |||||  |||| ||||||||||||||| ||||||    
T  39561949 aa-----gtgaaacaaaattattctccaaaaacgacatgtattgtgaaacggagggagta 39561895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 1646396 - 1646565
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||   |||| ||||||| |||||||||||    
T  1646396 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagataatacttaatgttgcattgaaact 1646494  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagtag 169  Q
    ||||||||| || ||  ||||||||||||||||||  |||||||||| ||||| ||||||||| |||||||    
T  1646495 tgaaagtgataagtattgtgaaacaaaattattctctaaaatggacaggtattatgaaacggagggagtag 1646565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 31 - 168
Target Start/End: Complemental strand, 37673880 - 37673743
Alignment:
Q  31 tttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaatta 129  Q
    ||||||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||||| ||||||||| ||   ||||||||| |||    
T  37673880 tttttctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaacttggaagtgacaagtattttgaaacaaagtta 37673782  T
Q  130 ttcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||  |||||||||||||||| ||||||||| ||||||    
T  37673781 ttctctaaaatggacaagtattatgaaacggaaggagta 37673743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 33 - 161
Target Start/End: Complemental strand, 37284652 - 37284526
Alignment:
Q  33 tttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattatt 131  Q
    ||||||||||||||||||| ||||| | ||||| |||||| |||||||| ||||| |||||||||||||||| |||||| ||||||||||||||||||||    
T  37284652 tttctctctacaataaataggtaagag-tattagtgataaatcaataat-aatgttgcattgaaacttgaaaatgacaagtaaagtgaaacaaaattatt 37284555  T
Q  132 cttcaaaatggacaagtattgtgaaacgga 161  Q
    || |||||  || |||||||||||||||||    
T  37284554 ctccaaaagaga-aagtattgtgaaacgga 37284526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 32839035 - 32838929
Alignment:
Q  63 ttattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||||||||||   |||||||||| | ||||||||||||||||||||||| |||| |||||||||||||||||||||||  |||| |||||||||| | ||    
T  32839035 ttattgataaacaaataattaatattgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattcttcaaaaacgacatgtattgtgaagcaga 32838936  T
Q  162 tggagta 168  Q
    |||||||    
T  32838935 tggagta 32838929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 4917880 - 4918038
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||||||| || |||||| ||||||| |||||||  | |||||| ||  ||||||||||||| | ||| ||| | |||||||||    
T  4917880 atttattatttcattctattatttctcactctaccataaataggtaaggga-actattgacaagccaataattaatgttgaattaaaattcgaaagtgac 4917978  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || ||| ||||| ||||||| || |||||||  ||||| |||||||||||||||| ||||    
T  4917979 aagtaatgtgaagcaaaattgtttttcaaaaatgacaaatattgtgaaacggatgaagta 4918038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 161
Target Start/End: Complemental strand, 28110250 - 28110102
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||| ||||||| |||   | ||||||||| ||||||| ||||||||||||  ||||||||||||| |||||||||||||||| ||||    
T  28110250 atttattattttattcgattatttctct---tgcaataaatatgtaaggg-tattattgataaaccaataattaatgttgcattgaaacttgaaaatgac 28110155  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    || ||| |||||||||  || |||| |||||  || || ||||||||||||||    
T  28110154 aagtaatgtgaaacaagttttttctccaaaaacgataaatattgtgaaacgga 28110102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 60 - 161
Target Start/End: Original strand, 36447426 - 36447528
Alignment:
Q  60 gtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaac 158  Q
    |||||||||||||  ||||||||||  | ||||||||| ||||||||||| ||||||||||||||||||||||||  ||||  |||| ||||||||||||    
T  36447426 gtattattgataaaccaataattaacattgcattgaaatttgaaagtgacgaataaagtgaaacaaaattattctctaaaagcgacatgtattgtgaaac 36447525  T
Q  159 gga 161  Q
    |||    
T  36447526 gga 36447528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 34242084 - 34242216
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaat-gtgcattgaaactt 99  Q
    |||||||  ||||||||||| ||| | |||||| ||||||||||||||||| |||| || ||||||||||||  ||||| |||||  |||||| ||||||    
T  34242084 cccttacccatttattatttcattatgttatttctctctctacaataaataggtaa-ggatattattgataaaccaatatttaatattgcattaaaactt 34242182  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattct 133  Q
     |||||||| | |||| |||||||||||||||||    
T  34242183 aaaagtgaccagtaaaatgaaacaaaattattct 34242216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 19976440 - 19976568
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||||  ||||||||||| ||| |||||| |  ||||||||||||||||  ||| |  ||||||||||||   |||||||||||| ||||||||||||    
T  19976440 cccttacctatttattattttattatattatct--ctctctacaataaatagataatga-tattattgataaactaataattaatgttgcattgaaactt 19976536  T
Q  100 gaaagtgacaaataaagtgaaacaaaattatt 131  Q
    ||||||||||| |||| |||||||||||||||    
T  19976537 gaaagtgacaagtaaaatgaaacaaaattatt 19976568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 4 - 139
Target Start/End: Complemental strand, 1002895 - 1002760
Alignment:
Q  4 ttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaa 102  Q
    ||||| ||||||||||| |||||||||||| |||||||||||||||||  ||| || ||| ||| ||||  |||||||||||| |||||||| | |||||    
T  1002895 ttactcatttattatttcattctattatttctctctctacaataaatagataa-ggatataattaataaaccaataattaatgttgcattgagatttgaa 1002797  T
Q  103 agtgacaaataaagtgaaacaaaattattcttcaaaa 139  Q
    | |||||| |||| | ||| ||||| ||||| |||||    
T  1002796 aatgacaagtaaaataaaataaaataattctccaaaa 1002760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 22 - 107
Target Start/End: Complemental strand, 28401481 - 28401396
Alignment:
Q  22 attctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    |||||||||||||||||| |||||||| || | ||||| ||||||||| || |||||||||||||| || |||||||||||||||||    
T  28401481 attctattatttttctctttacaataattaggcaaggg-tattattgacaaatcaataattaatgtggccttgaaacttgaaagtga 28401396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 14779971 - 14780023
Alignment:
Q  87 tgcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaa 139  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||| |||||    
T  14779971 tgcattgaaacttgaaagtgacaagtaaaatgaaacaaaattattctccaaaa 14780023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 10 - 71
Target Start/End: Complemental strand, 32840331 - 32840271
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgata 71  Q
    ||||||||||| |||||||||||| ||||| || ||||||||||||| ||||||||||||||    
T  32840331 atttattatttcattctattatttctctctgtaaaataaataagtaa-gggtattattgata 32840271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 24777776 - 24777826
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaata 51  Q
    |||||| | ||||||||||| ||||||||||||||||||||| ||||||||    
T  24777776 cccttatttatttattatttcattctattatttttctctctagaataaata 24777826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 51
Target Start/End: Original strand, 18078174 - 18078215
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaata 51  Q
    |||||||| || ||||||||||||||||||||||||||||||    
T  18078174 atttattaattcattctattatttttctctctacaataaata 18078215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 150
Target Start/End: Complemental strand, 27901106 - 27900968
Alignment:
Q  12 ttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgtg-cattgaaacttgaaagtgacaa 110  Q
    ||||||||| ||| |||||||| |||| ||| | ||| |||||||||| ||||||||| || | ||| |||||| |  ||| ||||||||||||||| ||    
T  27901106 ttattatttcattatattatttatctcactatagtaattaagtaaggg-tattattgacaaattaattattaatattacatcgaaacttgaaagtgaaaa 27901008  T
Q  111 ataaagtgaaacaaaattattcttcaaaatggacaagtat 150  Q
     |||| ||||| ||||| |||  ||||||  |||||||||    
T  27901007 gtaaaatgaaataaaataatttctcaaaagtgacaagtat 27900968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 10 - 57
Target Start/End: Original strand, 36447349 - 36447396
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaag 57  Q
    ||||||||||| |||||||||||| || |||||||||||||| |||||    
T  36447349 atttattatttcattctattatttatccctctacaataaataggtaag 36447396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 27813920 - 27814088
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  27813920 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaacacaataattaatgttgcattgaaact 27814018  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  27814019 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 27814088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 16662212 - 16662370
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| |||| ||| ||| ||||||||||||| ||||||| ||||| ||| || |||||||||||||| |||||||||||||||||||||    
T  16662212 atttattattttattatattctttctctatctacaataaataggtaaggg-tattaatgacaaatcaataattaatgttgcattgaaacttgaaagtgac 16662310  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || |||  | |||||||||||||||||||||  |||||||||||||||| ||| ||||||    
T  16662311 aagtaatttaaaacaaaattattcttcaaaagtgacaagtattgtgaaatggagggagta 16662370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 17636572 - 17636730
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| |||| ||| ||| ||||||||||||| ||||||| ||||| ||| || |||||||||||||| |||||||||||||||||||||    
T  17636572 atttattattttattatattctttctctatctacaataaataggtaaggg-tattaatgacaaatcaataattaatgttgcattgaaacttgaaagtgac 17636670  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    || |||  | |||||||||||||||||||||  |||||||||||||||| ||| ||||||    
T  17636671 aagtaatttaaaacaaaattattcttcaaaagtgacaagtattgtgaaatggagggagta 17636730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 36453292 - 36453131
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  36453292 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 36453194  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    |||||||||||| ||  ||||||||||||||||||  |||||||||||||||| |||||||||    
T  36453193 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacgga 36453131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 25614521 - 25614353
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  25614521 cccttaatcatttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 25614423  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    | |||||||||| ||  ||||||||||||||||||  ||||||||||| |||| ||||||||| ||||||    
T  25614422 taaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaattattatgaaacggagggagta 25614353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 47110558 - 47110727
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctct--acaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaac 97  Q
    |||||| | ||||||||||| ||| |||| |||||||||||  |||||||||| | ||||| ||||||||| ||  ||||||||||||| ||||||||||    
T  47110558 cccttaatcatttattattttattttattttttttctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaac 47110656  T
Q  98 ttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||||| ||  ||||||||||||||||||  |||||| | ||||||| ||||||||| ||||||    
T  47110657 ttgaaagtgacaagtattgtgaaacaaaattattctctaaaatgaataagtattatgaaacggagggagta 47110727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 10981617 - 10981785
Alignment:
Q  1 cccttactaatttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaact 98  Q
    |||||| | ||||||||||| ||| |||| || | ||||||||||||||||| | ||||| ||||||||| ||  ||||||||||||| |||||||||||    
T  10981617 cccttaatcatttattatttcattttatttttctctctctctacaataaatatgcaaggg-tattattgacaagacaataattaatgttgcattgaaact 10981715  T
Q  99 tgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |||||||||||| ||  ||||||||||||||||||  ||||||||||| |||| ||||| ||| ||||||    
T  10981716 tgaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaaatattatgaaatggagggagta 10981785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 24456910 - 24456775
Alignment:
Q  23 ttctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaa 121  Q
    ||||||||||| ||||||||||||| ||| | ||||| |||||||||||| | | || ||||||| |||||||||||||| |||||||| |||||| |||    
T  24456910 ttctattatttatctctctacaatacataggcaaggg-tattattgataaattagtagttaatgttgcattgaaacttgagagtgacaagtaaagttaaa 24456812  T
Q  122 caaaattattcttcaaaatggacaagtattgtgaaac 158  Q
    ||||||||||||||||||  |||| ||||||| ||||    
T  24456811 caaaattattcttcaaaagcgacatgtattgtaaaac 24456775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 139
Target Start/End: Original strand, 3091635 - 3091761
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||    ||||||||||||||||||| ||||||| ||||||||| ||  ||||| ||||||| |||||||||||| ||| ||||    
T  3091635 atttattatttcattctata---tttctctctacaataaatatgtaaggg-tattattgacaaaccaatatttaatgttgcattgaaacttaaaaatgac 3091730  T
Q  109 aaataaagtgaaacaaaattattcttcaaaa 139  Q
    || ||||||||||||||||||||||| ||||    
T  3091731 aagtaaagtgaaacaaaattattcttaaaaa 3091761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 33 - 139
Target Start/End: Complemental strand, 27941119 - 27941013
Alignment:
Q  33 tttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattatt 131  Q
    ||||| ||||||||||||||||||||| ||||||||| ||  ||||||||||||| ||| ||||||||||||||||||| ||| ||||||||||||| ||    
T  27941119 tttctttctacaataaataagtaaggg-tattattgacaagccaataattaatgttgcaatgaaacttgaaagtgacaagtaatgtgaaacaaaattgtt 27941021  T
Q  132 cttcaaaa 139  Q
    || |||||    
T  27941020 ctccaaaa 27941013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 35 - 168
Target Start/End: Original strand, 40349106 - 40349238
Alignment:
Q  35 tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattct 133  Q
    ||||||||||||||||| | ||||| |||||||||  |  ||||||||||||| |||||||||||| |||||||||| ||  |||||||||| |||||||    
T  40349106 tctctctacaataaatatgcaaggg-tattattgaccaaacaataattaatgttgcattgaaacttaaaagtgacaagtattgtgaaacaaa-ttattct 40349203  T
Q  134 tcaaaatggacaagtattgtgaaacggatggagta 168  Q
      |||||||||||||||| ||||||||| ||||||    
T  40349204 ctaaaatggacaagtattatgaaacggagggagta 40349238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 22 - 161
Target Start/End: Original strand, 8380069 - 8380206
Alignment:
Q  22 attctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaaagtgacaaataaagtgaa 120  Q
    ||||||||||||||||||||||||||||||||||| ||||||| || | ||  |||||| ||||| || |||||||||| ||||||||||| ||||||||    
T  8380069 attctattatttttctctctacaataaataagtaa-gggtatttttaacaaaccaataactaatgttgtattgaaacttaaaagtgacaaaaaaagtgaa 8380167  T
Q  121 acaaaattattcttcaaaatggacaagtattgtgaaacgga 161  Q
    ||  | ||||||| |||||  |||| ||||||| |||||||    
T  8380168 ac--agttattctccaaaaacgacatgtattgtaaaacgga 8380206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 10 - 139
Target Start/End: Complemental strand, 7743556 - 7743427
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||| ||||||| |||||||||||||||||  |  | | ||||| ||| ||| ||||||||||  | |||||||||||| ||| ||||    
T  7743556 atttattatttcattcaattatttatctctctacaataaatatatctgag-tattactgagaatccaataattaacattgcattgaaacttaaaaatgac 7743458  T
Q  109 aaataaagtgaaacaaaattattcttcaaaa 139  Q
    ||||||||||||| |||||||||||||||||    
T  7743457 aaataaagtgaaataaaattattcttcaaaa 7743427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 16360576 - 16360653
Alignment:
Q  90 attgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||||||||||||||||||||| ||||||||| | |||||||||| |||||  ||||| ||||||||||| || ||||||    
T  16360576 attgaaacttgaaagtgacaagtaaagtgaagc-aaattattctccaaaaacgacaaatattgtgaaacagaaggagta 16360653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 35112548 - 35112438
Alignment:
Q  29 tatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaaagtgacaaataaagtgaaacaaaat 127  Q
    |||||||||||| ||||||||||| ||| ||||| ||||| |||  ||||| |||||| |||| ||||  ||||||||||||  |||| |||||||||||    
T  35112548 tatttttctctccacaataaataactaa-gggtaatattggtaaaacaatatttaatgttgcaatgaactttgaaagtgacagttaaattgaaacaaaat 35112450  T
Q  128 tattcttcaaaa 139  Q
    | |||| |||||    
T  35112449 ttttctccaaaa 35112438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 10 - 110
Target Start/End: Complemental strand, 3498913 - 3498813
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaa-tgtgcattgaaacttgaaagtgac 108  Q
    ||||||||||| ||| |||| ||| ||||| || |||||||| |||| | ||||||| ||||| ||||||||||| | |||||||||| ||||| |||||    
T  3498913 atttattatttcattttattttttctctctttaaaataaatatgtaa-gagtattatcgataaatcaataattaattttgcattgaaagttgaatgtgac 3498815  T
Q  109 aa 110  Q
    ||    
T  3498814 aa 3498813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 28200503 - 28200566
Alignment:
Q  94 aaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaa 157  Q
    |||||| |||||||||| ||||||||||||||||| ||||| ||||  ||||| |||| |||||    
T  28200503 aaacttaaaagtgacaagtaaagtgaaacaaaattgttcttaaaaaacgacaaatattatgaaa 28200566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0343 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0343
Description:

Target: scaffold0343; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 12 - 158
Target Start/End: Complemental strand, 7056 - 6911
Alignment:
Q  12 ttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatg-tgcattgaaacttgaaagtgacaa 110  Q
    ||||||||| ||| ||||||||||||||||||||||||||||||| | |||||||||| |  ||||||||||||| ||||||||||||| |||  |||||    
T  7056 ttattattttattatattatttttctctctacaataaataagtaa-gagtattattgacacgtcaataattaatgttgcattgaaactt-aaacggacaa 6959  T
Q  111 ataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaac 158  Q
    ||||  ||||||||||||||||| |||||  |||||||||||||||||    
T  6958 ataatatgaaacaaaattattctccaaaaacgacaagtattgtgaaac 6911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 68; Significance: 3e-30; HSPs: 1)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 45572 - 45730
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| ||| |||||||||||||  |||||  ||||||||||||| ||||||||||| | ||||||||| ||||||| |||    
T  45572 atttattattttattctattttttctctttctacaataaatatttaaggt-tattattgataatacaataattaatattgcattgaaatttgaaagagac 45670  T
Q  109 aaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    |  ||  ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||    
T  45671 atgtattgtgaaacaaaattattctctaaaatggacaagtattatgaaacggagggagta 45730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 7788 - 7945
Alignment:
Q  11 tttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgaca 109  Q
    |||||||||| |||||||| ||| ||||| ||||||||||| ||||| | ||||||||| ||  | ||||||||||| ||||| ||||||||||||||||    
T  7788 tttattatttcattctattgtttctctctttacaataaataggtaagag-tattattgacaaaccgataattaatgttgcattaaaacttgaaagtgaca 7886  T
Q  110 aataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    | ||| |||||  |||||||||||| ||||  ||||||||||||||||| |||||||||    
T  7887 agtaatgtgaattaaaattattctttaaaaacgacaagtattgtgaaacagatggagta 7945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1770 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: scaffold1770
Description:

Target: scaffold1770; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 10 - 168
Target Start/End: Original strand, 280 - 438
Alignment:
Q  10 atttattatttaattctattatttt-tctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtga 107  Q
    ||||||||||| ||| |||| |||| ||||||||||||||||| | ||||| ||||||||| ||  ||||| ||||||| ||||||||||||||||||||    
T  280 atttattatttcattttatttttttctctctctacaataaatatgcaaggg-tattattgacaagacaata-ttaatgttgcattgaaacttgaaagtga 377  T
Q  108 caaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacggatggagta 168  Q
    ||| ||  |||||||||||||||| |  |||||||||||||||| ||||||||| ||||||    
T  378 caagtattgtgaaacaaaattattttctaaaatggacaagtattatgaaacggagggagta 438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 433 - 287
Alignment:
Q  1 cccttactaatttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaactt 99  Q
    |||||| | ||||||||||| |||||||| ||| ||||||||||||||||| |||| |  ||||||||| ||  ||||||||||||| ||||| ||| ||    
T  433 cccttaatcatttattatttcattctatt-tttctctctctacaataaatatgtaatga-tattattgacaagacaataattaatgttgcattaaaattt 336  T
Q  100 gaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagt 148  Q
     |||||||||| ||  ||||||||||||||||||  |||||||||||||    
T  335 aaaagtgacaagtattgtgaaacaaaattattctctaaaatggacaagt 287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 29 - 158
Target Start/End: Original strand, 71221 - 71350
Alignment:
Q  29 tatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaat 127  Q
    ||||| ||| ||||||||||||| ||||||| ||| ||| | ||  ||||||||||| | ||||| |||||| |||||||||| ||| |||||| |||||    
T  71221 tatttctctatctacaataaataggtaaggg-tataattaacaaaccaataattaattttgcattcaaacttaaaagtgacaagtaatgtgaaataaaat 71319  T
Q  128 tattcttcaaaatggacaagtattgtgaaac 158  Q
    ||||||||||||  |||||||||||||||||    
T  71320 tattcttcaaaaacgacaagtattgtgaaac 71350  T

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Target: scaffold0076 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 124
Target Start/End: Complemental strand, 15479 - 15367
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||| |||||||  |||||||||||||| ||||||| | ||||||||| ||  | ||||||||||| |||||||||||| ||||| ||    
T  15479 atttattatttcattcaattattt--ctctctacaataaaaaagtaagcg-tattattgacaaaccgataattaatgttgcattgaaacttaaaagttac 15383  T
Q  109 aaataaagtgaaacaa 124  Q
    |  |||||||||||||    
T  15382 atgtaaagtgaaacaa 15367  T

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Target: scaffold0025 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 10 - 133
Target Start/End: Complemental strand, 65322 - 65200
Alignment:
Q  10 atttattatttaattctattatttttctctctacaataaataagtaaggggtattattgataattcaataattaatgt-gcattgaaacttgaaagtgac 108  Q
    ||||||||||| |||||||| ||| ||| |||||| ||||||  |||||| ||||||||| ||  ||||||||||| | ||||||||| || ||||||||    
T  65322 atttattatttcattctattttttctctttctaca-taaatagataaggg-tattattgacaaaccaataattaatattgcattgaaatttaaaagtgac 65225  T
Q  109 aaataaagtgaaacaaaattattct 133  Q
    || |||  |||||||||||||||||    
T  65224 aagtaatatgaaacaaaattattct 65200  T

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Target: scaffold0939 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0939
Description:

Target: scaffold0939; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 61 - 168
Target Start/End: Original strand, 1110 - 1213
Alignment:
Q  61 tattattgataattcaataattaatgt-gcattgaaacttgaaagtgacaaataaagtgaaacaaaattattcttcaaaatggacaagtattgtgaaacg 159  Q
    ||||||||||||  ||||||||||||| |||| ||||||| ||| |||||| |||| | ||||||||||||||| |||     |||  ||||||||||||    
T  1110 tattattgataaaccaataattaatgttgcatcgaaacttaaaaatgacaagtaaaataaaacaaaattattctccaa-----acatttattgtgaaacg 1204  T
Q  160 gatggagta 168  Q
    |||||||||    
T  1205 gatggagta 1213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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