View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1570_low_5 (Length: 388)

Name: NF1570_low_5
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1570_low_5
NF1570_low_5
[»] chr1 (46 HSPs)
chr1 (1-219)||(3337987-3338206)
chr1 (69-156)||(45753445-45753532)
chr1 (69-147)||(25095604-25095682)
chr1 (72-153)||(28171509-28171590)
chr1 (68-152)||(5115634-5115718)
chr1 (227-271)||(15463691-15463735)
chr1 (88-156)||(38570378-38570446)
chr1 (91-155)||(40203103-40203167)
chr1 (197-266)||(50476423-50476492)
chr1 (66-153)||(4039629-4039716)
chr1 (197-266)||(1688351-1688420)
chr1 (227-267)||(26757321-26757361)
chr1 (227-266)||(8156504-8156543)
chr1 (197-269)||(42488762-42488834)
chr1 (88-155)||(50974599-50974666)
chr1 (227-269)||(896660-896702)
chr1 (197-268)||(17688213-17688284)
chr1 (67-145)||(31745442-31745520)
chr1 (61-155)||(45584526-45584620)
chr1 (69-150)||(5597711-5597792)
chr1 (81-145)||(34596155-34596217)
chr1 (232-269)||(43572126-43572163)
chr1 (227-263)||(14152580-14152616)
chr1 (227-263)||(28773544-28773580)
chr1 (88-156)||(42564212-42564280)
chr1 (235-271)||(43036136-43036172)
chr1 (227-266)||(1278351-1278390)
chr1 (232-271)||(12293677-12293716)
chr1 (68-147)||(33744168-33744247)
chr1 (68-143)||(34445663-34445738)
chr1 (235-270)||(49102789-49102824)
chr1 (91-149)||(2351400-2351458)
chr1 (232-270)||(9595790-9595828)
chr1 (72-145)||(22870945-22871019)
chr1 (232-278)||(27499844-27499890)
chr1 (235-269)||(39509000-39509034)
chr1 (88-145)||(5787477-5787534)
chr1 (118-155)||(6983015-6983052)
chr1 (232-269)||(32299332-32299369)
chr1 (232-269)||(32300284-32300321)
chr1 (232-269)||(47905864-47905901)
chr1 (233-266)||(51246739-51246772)
chr1 (66-146)||(4521042-4521122)
chr1 (237-269)||(17675418-17675450)
chr1 (232-268)||(39179281-39179317)
chr1 (233-273)||(43591520-43591560)
[»] chr7 (32 HSPs)
chr7 (232-378)||(33406807-33406953)
chr7 (66-153)||(7596173-7596261)
chr7 (68-156)||(8920727-8920815)
chr7 (69-145)||(16878702-16878778)
chr7 (197-268)||(33113776-33113847)
chr7 (69-145)||(676408-676483)
chr7 (71-155)||(44391453-44391537)
chr7 (197-268)||(3571894-3571965)
chr7 (91-156)||(37352435-37352500)
chr7 (196-266)||(43188747-43188817)
chr7 (66-145)||(17157804-17157884)
chr7 (88-156)||(45030762-45030829)
chr7 (74-145)||(2964049-2964120)
chr7 (232-271)||(33872229-33872268)
chr7 (88-155)||(38452185-38452252)
chr7 (90-145)||(44495232-44495287)
chr7 (66-145)||(47507602-47507681)
chr7 (232-266)||(3658686-3658720)
chr7 (232-266)||(7667340-7667374)
chr7 (91-145)||(35754061-35754115)
chr7 (235-269)||(38505159-38505193)
chr7 (66-155)||(42493700-42493790)
chr7 (106-155)||(15995921-15995970)
chr7 (235-268)||(23465816-23465849)
chr7 (105-146)||(33887886-33887927)
chr7 (70-155)||(35599827-35599912)
chr7 (235-264)||(36907515-36907544)
chr7 (88-145)||(48137797-48137854)
chr7 (232-268)||(7666980-7667016)
chr7 (65-153)||(33899763-33899851)
chr7 (232-268)||(38236021-38236057)
chr7 (232-272)||(43778756-43778796)
[»] scaffold0121 (1 HSPs)
scaffold0121 (70-156)||(28799-28885)
[»] chr8 (31 HSPs)
chr8 (72-156)||(2124090-2124176)
chr8 (70-144)||(30535014-30535088)
chr8 (197-266)||(36906064-36906133)
chr8 (69-153)||(42760174-42760258)
chr8 (68-153)||(7691353-7691438)
chr8 (66-143)||(45368760-45368837)
chr8 (197-262)||(4734631-4734696)
chr8 (71-155)||(20169743-20169827)
chr8 (69-145)||(33636713-33636789)
chr8 (69-136)||(39932721-39932788)
chr8 (232-269)||(3404748-3404785)
chr8 (106-155)||(44960495-44960544)
chr8 (88-153)||(40380161-40380228)
chr8 (69-149)||(43429684-43429764)
chr8 (66-153)||(2098155-2098240)
chr8 (120-155)||(9629844-9629879)
chr8 (197-264)||(2474901-2474968)
chr8 (69-155)||(22209401-22209487)
chr8 (67-145)||(27055903-27055981)
chr8 (91-145)||(28313572-28313625)
chr8 (68-153)||(36819708-36819794)
chr8 (69-155)||(39691139-39691225)
chr8 (69-127)||(44173778-44173836)
chr8 (92-145)||(11041085-11041138)
chr8 (232-269)||(34148395-34148432)
chr8 (232-269)||(37659348-37659385)
chr8 (63-111)||(5968370-5968418)
chr8 (227-263)||(15108409-15108445)
chr8 (63-138)||(29487101-29487177)
chr8 (72-129)||(33910733-33910792)
chr8 (232-268)||(36906418-36906454)
[»] chr5 (26 HSPs)
chr5 (69-156)||(8761922-8762009)
chr5 (66-156)||(27016663-27016753)
chr5 (70-128)||(37976444-37976502)
chr5 (195-266)||(32760634-32760705)
chr5 (91-145)||(12448688-12448742)
chr5 (197-268)||(38928837-38928908)
chr5 (61-145)||(19692710-19692795)
chr5 (70-155)||(35395184-35395269)
chr5 (61-156)||(31672398-31672494)
chr5 (60-144)||(32017454-32017538)
chr5 (232-268)||(35700930-35700966)
chr5 (62-145)||(26663623-26663706)
chr5 (62-145)||(26935218-26935301)
chr5 (69-156)||(27650833-27650919)
chr5 (61-155)||(31889602-31889697)
chr5 (227-266)||(38289534-38289573)
chr5 (235-269)||(4841523-4841557)
chr5 (91-149)||(13978663-13978721)
chr5 (66-156)||(14475024-14475114)
chr5 (227-268)||(37508558-37508600)
chr5 (227-268)||(38120340-38120381)
chr5 (237-269)||(4649157-4649189)
chr5 (232-268)||(12229638-12229674)
chr5 (235-271)||(13450703-13450739)
chr5 (66-146)||(34032124-34032204)
chr5 (69-145)||(35515929-35516004)
[»] chr2 (37 HSPs)
chr2 (69-156)||(5961987-5962076)
chr2 (67-156)||(6761750-6761839)
chr2 (69-156)||(42966951-42967039)
chr2 (66-160)||(8773693-8773787)
chr2 (197-268)||(30312540-30312611)
chr2 (197-272)||(44137023-44137098)
chr2 (69-160)||(8789851-8789942)
chr2 (197-269)||(38293758-38293830)
chr2 (69-155)||(4238350-4238436)
chr2 (88-152)||(4616853-4616916)
chr2 (69-133)||(33275940-33276004)
chr2 (227-266)||(8411096-8411135)
chr2 (232-271)||(18780249-18780288)
chr2 (68-155)||(42924442-42924529)
chr2 (66-156)||(12075546-12075636)
chr2 (91-153)||(13197268-13197329)
chr2 (227-272)||(19382752-19382797)
chr2 (69-154)||(44941107-44941192)
chr2 (237-269)||(13766108-13766140)
chr2 (235-271)||(16625627-16625663)
chr2 (197-269)||(725829-725901)
chr2 (70-145)||(2825991-2826066)
chr2 (68-155)||(8964386-8964473)
chr2 (232-270)||(11950229-11950267)
chr2 (233-267)||(31550078-31550112)
chr2 (232-266)||(41099933-41099967)
chr2 (66-155)||(3882608-3882697)
chr2 (232-269)||(8991136-8991173)
chr2 (235-268)||(15803404-15803437)
chr2 (72-145)||(34355348-34355420)
chr2 (236-269)||(41655222-41655255)
chr2 (68-132)||(3199536-3199600)
chr2 (98-138)||(11278757-11278797)
chr2 (232-268)||(14008145-14008181)
chr2 (227-263)||(29880654-29880690)
chr2 (227-263)||(32243355-32243391)
chr2 (229-269)||(42644534-42644574)
[»] chr4 (45 HSPs)
chr4 (91-155)||(41370193-41370257)
chr4 (72-156)||(54543568-54543652)
chr4 (66-156)||(34235904-34235995)
chr4 (88-152)||(31871083-31871147)
chr4 (70-152)||(40666965-40667048)
chr4 (197-264)||(13270408-13270475)
chr4 (66-156)||(35180629-35180719)
chr4 (227-269)||(41844311-41844353)
chr4 (228-268)||(904072-904112)
chr4 (69-143)||(23230272-23230347)
chr4 (64-155)||(44690288-44690379)
chr4 (66-156)||(7627951-7628041)
chr4 (61-155)||(41956455-41956549)
chr4 (65-155)||(44647906-44647996)
chr4 (232-269)||(38365898-38365935)
chr4 (88-153)||(49144777-49144842)
chr4 (88-156)||(1696212-1696280)
chr4 (227-267)||(36151535-36151575)
chr4 (69-149)||(40480201-40480281)
chr4 (61-145)||(53737829-53737913)
chr4 (232-271)||(7182366-7182405)
chr4 (227-266)||(17622629-17622668)
chr4 (88-155)||(33982439-33982506)
chr4 (88-142)||(5387947-5388001)
chr4 (69-143)||(11875465-11875538)
chr4 (68-153)||(12329286-12329372)
chr4 (236-270)||(35959400-35959434)
chr4 (66-156)||(39727578-39727667)
chr4 (232-266)||(41363987-41364021)
chr4 (93-155)||(42844062-42844124)
chr4 (232-270)||(45899259-45899297)
chr4 (227-269)||(49936388-49936430)
chr4 (66-156)||(53919860-53919950)
chr4 (66-155)||(6316831-6316920)
chr4 (66-155)||(12103865-12103954)
chr4 (70-111)||(28165388-28165429)
chr4 (232-269)||(31187269-31187306)
chr4 (227-268)||(47669683-47669724)
chr4 (232-265)||(49936726-49936759)
chr4 (235-268)||(55510136-55510169)
chr4 (119-155)||(2076838-2076874)
chr4 (69-153)||(16555962-16556046)
chr4 (232-268)||(32948692-32948728)
chr4 (69-145)||(42197031-42197106)
chr4 (237-269)||(48830985-48831017)
[»] chr6 (14 HSPs)
chr6 (61-156)||(7465464-7465559)
chr6 (66-145)||(31702775-31702854)
chr6 (94-156)||(30396268-30396329)
chr6 (92-156)||(27843230-27843295)
chr6 (94-151)||(10346023-10346080)
chr6 (67-156)||(11675630-11675722)
chr6 (197-263)||(26574530-26574596)
chr6 (63-111)||(6048339-6048387)
chr6 (227-271)||(9104764-9104808)
chr6 (197-266)||(24734759-24734828)
chr6 (232-271)||(24735111-24735150)
chr6 (232-266)||(2365772-2365806)
chr6 (88-145)||(12307839-12307896)
chr6 (232-268)||(5825561-5825597)
[»] chr3 (43 HSPs)
chr3 (60-156)||(1511320-1511417)
chr3 (69-156)||(31419204-31419289)
chr3 (88-156)||(53433210-53433278)
chr3 (66-156)||(41571591-41571682)
chr3 (66-156)||(30463981-30464071)
chr3 (89-155)||(55110042-55110108)
chr3 (88-153)||(37744995-37745060)
chr3 (88-145)||(42180908-42180967)
chr3 (197-266)||(42583406-42583475)
chr3 (66-145)||(38388704-38388783)
chr3 (197-269)||(38526027-38526099)
chr3 (69-136)||(54866289-54866356)
chr3 (69-147)||(779708-779786)
chr3 (232-266)||(30132060-30132094)
chr3 (94-155)||(19898127-19898188)
chr3 (232-269)||(30121337-30121374)
chr3 (227-268)||(46312586-46312627)
chr3 (66-153)||(29099167-29099255)
chr3 (69-149)||(38094453-38094533)
chr3 (227-267)||(40119054-40119094)
chr3 (237-268)||(2420883-2420914)
chr3 (69-155)||(25548223-25548310)
chr3 (89-156)||(28434526-28434592)
chr3 (232-267)||(38592851-38592886)
chr3 (227-266)||(45555509-45555548)
chr3 (94-153)||(45566109-45566168)
chr3 (232-266)||(32859068-32859102)
chr3 (232-270)||(38515466-38515504)
chr3 (232-266)||(52620653-52620687)
chr3 (197-247)||(17642486-17642536)
chr3 (237-270)||(36185223-36185256)
chr3 (232-265)||(47714852-47714885)
chr3 (232-269)||(47789621-47789658)
chr3 (228-269)||(49683167-49683208)
chr3 (94-155)||(51039775-51039836)
chr3 (69-137)||(4824656-4824724)
chr3 (235-271)||(35283319-35283355)
chr3 (237-269)||(43237170-43237202)
chr3 (232-268)||(44411970-44412006)
chr3 (227-263)||(44412320-44412356)
chr3 (232-268)||(49861065-49861101)
chr3 (237-269)||(55439463-55439495)
chr3 (237-269)||(55444974-55445006)
[»] scaffold0221 (1 HSPs)
scaffold0221 (66-156)||(1913-2001)
[»] scaffold0246 (1 HSPs)
scaffold0246 (69-149)||(18140-18220)
[»] scaffold0245 (1 HSPs)
scaffold0245 (227-266)||(4028-4067)
[»] scaffold0229 (1 HSPs)
scaffold0229 (227-266)||(4359-4398)
[»] scaffold0036 (1 HSPs)
scaffold0036 (227-269)||(82930-82972)
[»] scaffold0006 (1 HSPs)
scaffold0006 (232-266)||(59672-59706)


Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 3338206 - 3337987
Alignment:
Q  1 caaataatattaataagtaatatcaatggatatgttgtgggtctaacgagtgtccccagaccccagggcactctttaaacattctacaagaagaaattat 100  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||    
T  3338206 caaataatattaataagtaatatcaatggatatgttatgggtctaacgagtgtccccagacctcagggtactctttaaacattctaaaagaagaaattat 3338107  T
Q  101 ttcataaaaaat-ttaagtatttcaattttcaatgcattgattacataaattttcaagttactaaaattatttttaagttctccactcaatatcatatat 199  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3338106 ttcataaaaaaaattaagtatttcaattttcaatgcattgattacataaattttcaagttactaaaattatttttaagttctccactcaatatcatatat 3338007  T
Q  200 ttcttccacttgcttcttcc 219  Q
    ||||||||||||||||||||    
T  3338006 ttcttccacttgcttcttcc 3337987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 45753445 - 45753532
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||| |||||| ||||||||||||||||| |||||  | || |||||||||||||||||||||||||||| ||||||||||    
T  45753445 cactctttaaagattctaaaagaagaaattatttcagaaaaatgtcaaatatttcaattttcaatgcattgattacacaaattttcaa 45753532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 69 - 147
Target Start/End: Original strand, 25095604 - 25095682
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacata 147  Q
    ||||||||||  |||||| |||||||||||||||||||||||| | || ||||||||||||| ||||||||||||||||    
T  25095604 cactctttaaggattctaaaagaagaaattatttcataaaaaagtcaaatatttcaattttcgatgcattgattacata 25095682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 72 - 153
Target Start/End: Complemental strand, 28171590 - 28171509
Alignment:
Q  72 tctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||| ||||| | ||||| ||||||||| |||||||| |||| |||||||||||| |||||||| ||||||||||||||    
T  28171590 tctttaagcattcaaaaagaaaaaattattttataaaaaagttaaatatttcaatttttaatgcattcattacataaatttt 28171509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 152
Target Start/End: Complemental strand, 5115718 - 5115634
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattt 152  Q
    |||||||||||  |||||| ||||| ||||||| | |||||||| |||| ||||||||||| ||||||||| |||||| ||||||    
T  5115718 gcactctttaaggattctaaaagaataaattatgttataaaaaagttaaatatttcaatttccaatgcattaattacacaaattt 5115634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 15463735 - 15463691
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    ||||| |||||||||||||||||||||||||||||||||||||||    
T  15463735 caaaatcctcccctcccctccaaattcccaaacaaagccttagtg 15463691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 38570446 - 38570378
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||| ||||||| ||||| | || ||||||||||||||||||||| ||||||||| |||||||    
T  38570446 aagaagaaatgatttcatcaaaaagtcaaatatttcaattttcaatgcattaattacataagttttcaa 38570378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 40203167 - 40203103
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||||||||||| | || ||||||||||| |||||||||||||||| | |||||||    
T  40203167 aagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttca 40203103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 50476492 - 50476423
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||| |||||       |||||||||||||||||||||||| |||||||||||||||    
T  50476492 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcct 50476423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 4039716 - 4039629
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    |||||||||||||  |||| | ||||| ||||||||| |||||||| | || |||||| |||| |||||||||||||||||| |||||    
T  4039716 gggcactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttt 4039629  T

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Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 1688351 - 1688420
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||| |||||       |||||||||||||||||||||||| | |||||||||||||    
T  1688351 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaacttccaaacaaagcct 1688420  T

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Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 26757321 - 26757361
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcctt 267  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  26757321 caaaaccctcccctcccctccaaactcccaaacaaagcctt 26757361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 8156504 - 8156543
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  8156504 caaaaccctcccctcccctccaaactcccaaacaaagcct 8156543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 42488762 - 42488834
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||||||  ||||       |||||||||||||| ||||||||| ||||||||||||||||||    
T  42488762 tatttcttccacttgctcattccttttttccaaaaccctccccttccctccaaactcccaaacaaagccttag 42488834  T

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Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 155
Target Start/End: Complemental strand, 50974666 - 50974599
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||| ||||||||| |||||||| | || ||||||||||||| ||||||| |||||||| |||||||    
T  50974666 aagaaaaaattattttataaaaaagtcaaatatttcaattttcgatgcattaattacatatattttca 50974599  T

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Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 896660 - 896702
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||| |||||||||||||||||| ||||||||||||||||||    
T  896660 caaaatcctcccctcccctccaaactcccaaacaaagccttag 896702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 17688284 - 17688213
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||| |||||       |||||||||||||||||||||||| || ||||||||| ||||    
T  17688284 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactctcaaacaaagtctta 17688213  T

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Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 67 - 145
Target Start/End: Complemental strand, 31745520 - 31745442
Alignment:
Q  67 ggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||||||| |||||| ||||| ||||||||| |||| ||| | || |||||| ||| || ||||||||||||||    
T  31745520 ggcactctttaaagattctaaaagaataaattattttataataaagtcaaatatttcgattctcgatgcattgattaca 31745442  T

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Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 45584526 - 45584620
Alignment:
Q  61 ccccagggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||| |||||||||||||  |||| | ||||||||||||||| |||||||| |||| ||||| |||||   ||| |||||||||| | |||||||    
T  45584526 ccccggggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgattacacatattttca 45584620  T

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Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 150
Target Start/End: Original strand, 5597711 - 5597792
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaat 150  Q
    ||||||||||| ||| || ||||||||||||||  |||||||| |||| ||||| |||||| |||  |||||||||| ||||    
T  5597711 cactctttaaatattttaaaagaagaaattattctataaaaaagttaaatattttaatttttaatatattgattacaaaaat 5597792  T

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Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 81 - 145
Target Start/End: Complemental strand, 34596217 - 34596155
Alignment:
Q  81 attctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||| ||||||||||||||| ||||||  || || |||||| |||||||||||||||||||||    
T  34596217 attctaaaagaagaaattattttataaaa--ttcaaatatttcgattttcaatgcattgattaca 34596155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 43572126 - 43572163
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  43572126 ccctcccctcccctccaaactcccaaacaaagccttag 43572163  T

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Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 14152616 - 14152580
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaag 263  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14152616 caaaaccctcccctcccctccaaactcccaaacaaag 14152580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 28773544 - 28773580
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaag 263  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28773544 caaaaccctcccctcccctccaaactcccaaacaaag 28773580  T

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Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 42564212 - 42564280
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||| |||||||||||||||||| | || |||| ||||||||||| | ||||| ||| ||||||||||    
T  42564212 aagaaaaaattatttcataaaaaaatcaaatattacaattttcaatactttgataacacaaattttcaa 42564280  T

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Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 43036172 - 43036136
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    |||||||||||||||| ||||||||||||||||||||    
T  43036172 tcccctcccctccaaactcccaaacaaagccttagtg 43036136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 1278390 - 1278351
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  1278390 caaaactctcccctcccctccaaactcccaaacaaagcct 1278351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 12293716 - 12293677
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    ||||| ||||||||||||| ||||||||||||||||||||    
T  12293716 ccctctcctcccctccaaactcccaaacaaagccttagtg 12293677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 33744247 - 33744168
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacata 147  Q
    ||||||||||| |||| || || ||| ||||||||  | ||||| | || |||||| |||||||||||||||||||||||    
T  33744247 gcactctttaagcattttaaaataagtaattatttttttaaaaagtcaaatatttcgattttcaatgcattgattacata 33744168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 143
Target Start/End: Original strand, 34445663 - 34445738
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgatta 143  Q
    |||||||||||  |||| | |||||||||||| || |||||||| | || |||||| |||| ||||||||||||||    
T  34445663 gcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatta 34445738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 235 - 270
Target Start/End: Complemental strand, 49102824 - 49102789
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagccttagt 270  Q
    |||||||||||||||| |||||||||||||||||||    
T  49102824 tcccctcccctccaaactcccaaacaaagccttagt 49102789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Original strand, 2351400 - 2351458
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaa 149  Q
    ||||||||||||||||||||| | ||  |||| ||||| | ||||||||||||||||||    
T  2351400 aagaaattatttcataaaaaagtcaaacattttaatttccgatgcattgattacataaa 2351458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 9595790 - 9595828
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagt 270  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  9595790 ccctcccttcccctccaaactcccaaacaaagccttagt 9595828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 22871019 - 22870945
Alignment:
Q  72 tctttaaacattctacaagaagaaattatttcataa-aaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||| |||| || |||| ||||||||||||||| |||| |||| | ||||||||| ||||||||| ||||||    
T  22871019 tctttaagcattataaaagacgaaattatttcataaaaaaaattaaatgtttcaatttccaatgcattaattaca 22870945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 278
Target Start/End: Complemental strand, 27499890 - 27499844
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagtgtagcaaa 278  Q
    |||||||||||||| |||| ||||||||||||||| |||||| ||||    
T  27499890 ccctcccctccccttcaaactcccaaacaaagcctaagtgtatcaaa 27499844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 39509000 - 39509034
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||||| ||||||||||||||||||    
T  39509000 tcccctcccctccaaactcccaaacaaagccttag 39509034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 5787534 - 5787477
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||| ||||| |||||| | |||| ||||||||||| ||||||||| ||||||    
T  5787534 aagaagaaaatattttataaaatagttaaatatttcaatttccaatgcattaattaca 5787477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Complemental strand, 6983052 - 6983015
Alignment:
Q  118 tatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||||||||||||  ||||||||||||||    
T  6983052 tatttcaattttcaatgcattggatacataaattttca 6983015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 32299332 - 32299369
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  32299332 ccctcccttcccctccaaactcccaaacaaagccttag 32299369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 32300284 - 32300321
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  32300284 ccctcccttcccctccaaactcccaaacaaagccttag 32300321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 47905864 - 47905901
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||| |||||||||||||| ||||||||||||||||||    
T  47905864 cccttccctcccctccaaactcccaaacaaagccttag 47905901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 266
Target Start/End: Original strand, 51246739 - 51246772
Alignment:
Q  233 cctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||||||||| |||||||||||||||    
T  51246739 cctcccctcccctccaaactcccaaacaaagcct 51246772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 4521122 - 4521042
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacat 146  Q
    ||||||||||||| ||| ||| || |||  ||||||   ||||||| ||||  |||||||||| |||||||||||||||||    
T  4521122 gggcactctttaagcatactaaaacaagcgattattctttaaaaaagttaaacatttcaatttccaatgcattgattacat 4521042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 17675418 - 17675450
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||| ||||||||||||||||||    
T  17675418 ccctcccctccaaactcccaaacaaagccttag 17675450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 39179281 - 39179317
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  39179281 ccctcccttcccctccaaactcccaaacaaagcctta 39179317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 43591560 - 43591520
Alignment:
Q  233 cctcccctcccctccaaattcccaaacaaagccttagtgta 273  Q
    |||||||||||||| ||| ||||||||||||| ||||||||    
T  43591560 cctcccctcccctctaaactcccaaacaaagctttagtgta 43591520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 3e-70; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 232 - 378
Target Start/End: Original strand, 33406807 - 33406953
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagtgtagcaaatttattaattttgtagctgtaaaactgattcaagcatacgtttatctcacttt 331  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33406807 ccctcccctcccctccaaactcccaaacaaagccttagtgtagcaaatttattaattttgtagctgtaaaactgattcaagcatacgtttatctcacttt 33406906  T
Q  332 gtattaaattttgatattggtttatttgtagcacatcttatcctatg 378  Q
    |||||||||||||||||||||||||||| ||||||||||||| ||||    
T  33406907 gtattaaattttgatattggtttatttggagcacatcttatcttatg 33406953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 7596261 - 7596173
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaa-atttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||||||||| |||| || ||||||||||||||||||||||| | | ||  |||||||||| ||||||||||||||||| ||||||    
T  7596261 gggcactctttaagcattttaaaagaagaaattatttcataaaaagagtcaaaaatttcaatttccaatgcattgattacattaatttt 7596173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 156
Target Start/End: Complemental strand, 8920815 - 8920727
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||| ||||| | ||| |||||||||| |||| |||| | || | ||||||||| ||||||||||||||||||| |||||||    
T  8920815 gcactctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatgcattgattacataacttttcaa 8920727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 16878702 - 16878778
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||||| |||| | ||  |||||||||||||||||||| |||| |||||| ||| |||||||||||||||||    
T  16878702 cactctttaaagattcaataaagagaaattatttcataaaaaagttaaatatttcgattctcaatgcattgattaca 16878778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 33113776 - 33113847
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||| |||||        ||||||||||||||||||||||| |||||||||||||||||    
T  33113776 tatttcttccacttgctccttccttttttctaaaaccctcccctcccctccaaactcccaaacaaagcctta 33113847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 145
Target Start/End: Complemental strand, 676483 - 676408
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||||||||||||| || ||| |||||||| || ||||| |||| |||||| ||||| |||||||||||||||    
T  676483 cactctttaaacattctaaaataagtaattattt-attaaaaagttaaatatttcgattttaaatgcattgattaca 676408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 44391537 - 44391453
Alignment:
Q  71 ctctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||| |||||| ||||| ||||||||| ||||||| |  || |||||| ||||| ||||||||||||| ||| |||||||    
T  44391537 ctctttaaagattctaaaagaataaattattttataaaaagtcaaaatatttcgatttttaatgcattgattatatatattttca 44391453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 3571894 - 3571965
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||| |||||       ||||||||||||||||||||| || |||||||||||| ||||    
T  3571894 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctcccaactcccaaacaaagtctta 3571965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 91 - 156
Target Start/End: Complemental strand, 37352500 - 37352435
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||| ||| ||||| | || ||||||||||| ||||||||| |||||| ||||||||||    
T  37352500 aagaaattattccattaaaaagtcaaatatttcaatttccaatgcattaattacacaaattttcaa 37352435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 196 - 266
Target Start/End: Complemental strand, 43188817 - 43188747
Alignment:
Q  196 atatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||| |||||| |||||       |||||||||||||||||||||||| ||||||| |||||||    
T  43188817 atatttcttccccttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaaaaaagcct 43188747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 17157884 - 17157804
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcat-aaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||||||| ||||| | ||| |||||||||| ||| |||||| | || | ||||||||| ||||||||||||||||    
T  17157884 gggcactctttaagcattccaaaaggagaaattattccataaaaaaagtcaaatgtttcaatttccaatgcattgattaca 17157804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Original strand, 45030762 - 45030829
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||||||||||||||||| | || |||| ||||||||||| | ||||| ||| ||||||||||    
T  45030762 aagaagaaattatttcataaaaaa-tcaaatattacaattttcaatactttgataacacaaattttcaa 45030829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 2964049 - 2964120
Alignment:
Q  74 tttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||| |||||| ||||||||||||||| |||||||| ||||  ||||  |||||| || |||||||||||    
T  2964049 tttaaagattctaaaagaagaaattattttataaaaaaattaaaaattttgattttcgatacattgattaca 2964120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 33872229 - 33872268
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  33872229 ccctcccctcccctccaaactcgcaaacaaagccttagtg 33872268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 38452185 - 38452252
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||||| |||||||| | || ||||||||||| | |||||||| ||||| | |||||||    
T  38452185 aagaagaaattattttataaaaaagtcaaatatttcaatttccgatgcattggttacacatattttca 38452252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 90 - 145
Target Start/End: Original strand, 44495232 - 44495287
Alignment:
Q  90 gaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||| ||||||| ||||||||||||| |||||| ||||| ||| |||||||||||    
T  44495232 gaagatattattttataaaaaatttaaatatttcgatttttaattcattgattaca 44495287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 47507602 - 47507681
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||||||||  |||||| |||||||||| |||| |||||||| | ||  |||||||||| | ||| ||||||||||    
T  47507602 gggcactctttaaggattctaaaagaagaaataattttataaaaaaatcaaagatttcaatttccgatgtattgattaca 47507681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 3658686 - 3658720
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||||| |||||||||||||||    
T  3658686 ccctcccctcccctccaaactcccaaacaaagcct 3658720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 7667340 - 7667374
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||||| |||||||||||||||    
T  7667340 ccctcccctcccctccaaactcccaaacaaagcct 7667374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 35754061 - 35754115
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||||||| |||||| | | ||||||||| |||||||||||||| ||||||    
T  35754061 aagaaattattttataaaataatcaagtatttcgattttcaatgcattaattaca 35754115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 38505193 - 38505159
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||||| ||||||||||||||||||    
T  38505193 tcccctcccctccaaactcccaaacaaagccttag 38505159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 42493700 - 42493790
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaatta-tttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||||||||||  |||| | |||||||||||| ||| |||||||| | || |||||  |||||| |||||||||||||| | |||||||    
T  42493700 gggcactctttaaggattccaaaagaagaaattattttgataaaaaagtcaaatattttgattttcgatgcattgattacacatattttca 42493790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 15995921 - 15995970
Alignment:
Q  106 aaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||| |||| |||||| ||||||||||||||||||||| | |||||||    
T  15995921 aaaaaagttaaatatttcgattttcaatgcattgattacacatattttca 15995970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 23465849 - 23465816
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagcctta 268  Q
    |||||||||||||||| |||||||||||||||||    
T  23465849 tcccctcccctccaaactcccaaacaaagcctta 23465816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 146
Target Start/End: Complemental strand, 33887927 - 33887886
Alignment:
Q  105 taaaaaatttaagtatttcaattttcaatgcattgattacat 146  Q
    ||||||| | || |||||||||||||||||||||||||||||    
T  33887927 taaaaaagtcaaatatttcaattttcaatgcattgattacat 33887886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 155
Target Start/End: Complemental strand, 35599912 - 35599827
Alignment:
Q  70 actctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||| ||| |  | |||||||||   ||||||||| || || ||||| |||||||||||||| ||||||| ||||||    
T  35599912 actctttaaacatactaaattaggaaattattctttaaaaaattcaaatagttcaaatttcaatgcattgaatacataacttttca 35599827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 264
Target Start/End: Original strand, 36907515 - 36907544
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagc 264  Q
    ||||||||||||||||||||||||||||||    
T  36907515 tcccctcccctccaaattcccaaacaaagc 36907544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 48137797 - 48137854
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||||||||| |||||||| | || |||||  |||||| ||||||||||||||    
T  48137797 aagaagaaattattttataaaaaagtcaaatattttgattttcgatgcattgattaca 48137854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 7667016 - 7666980
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  7667016 ccctcccttcccctccaaactcccaaacaaagcctta 7666980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 65 - 153
Target Start/End: Complemental strand, 33899851 - 33899763
Alignment:
Q  65 agggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||||||||||| ||||   |  ||||||||||| | ||||||| | |   |||||||||||||||| ||||||| ||||||||||    
T  33899851 agggcactctttaaagattcctaataaagaaattattccttaaaaaaatcacaaatttcaattttcaatgtattgatttcataaatttt 33899763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 38236021 - 38236057
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  38236021 ccctcccttcccctccaaactcccaaacaaagcctta 38236057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 43778756 - 43778796
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagtgt 272  Q
    ||||||||||||||||||| | ||||||||||||| |||||    
T  43778756 ccctcccctcccctccaaacttccaaacaaagcctaagtgt 43778796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 70 - 156
Target Start/End: Complemental strand, 28885 - 28799
Alignment:
Q  70 actctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||||||| || |||||||||||||| ||||||||| |||| ||||| ||||||||||||||||| ||||| |||||||||    
T  28885 actctttaaacattttaaaagaagaaattattccataaaaaaattaaatattttaattttcaatgcattgaatacatcaattttcaa 28799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 31)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 72 - 156
Target Start/End: Complemental strand, 2124176 - 2124090
Alignment:
Q  72 tctttaaacattctacaagaagaaattatttcataaaaaat--ttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||||||| ||||||||||||||  ||||||||   ||||||||||||||||  ||||||||||||| ||||||||||||    
T  2124176 tctttaaacattctaaaagaagaaattattctataaaaaaaagttaagtatttcaatttcgaatgcattgattatataaattttcaa 2124090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 144
Target Start/End: Original strand, 30535014 - 30535088
Alignment:
Q  70 actctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattac 144  Q
    ||||||||| ||||||| ||| |||||||||| ||||||||| | || | |||||||||||||||||||||||||    
T  30535014 actctttaagcattctaaaaggagaaattattccataaaaaaatcaaatgtttcaattttcaatgcattgattac 30535088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 36906133 - 36906064
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||| |||||       |||||||||||||||||||||||| |||||||||||||||    
T  36906133 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcct 36906064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 153
Target Start/End: Complemental strand, 42760258 - 42760174
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    |||||||||| ||||| | ||| |||||||||| ||||||||| | || | ||||||||| ||||||||||||||||||| ||||    
T  42760258 cactctttaagcattccaaaaggagaaattattccataaaaaaatcaaatgtttcaatttccaatgcattgattacataattttt 42760174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 7691353 - 7691438
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||||||| |||| || |||||||||||||| |||| |||| |||| ||||||||||| | ||||||| |||  |||||||||    
T  7691353 gcactctttaagcattttaaaagaagaaattattccatacaaaaattaaatatttcaatttccgatgcattaattttataaatttt 7691438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 45368837 - 45368760
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgatta 143  Q
    |||||||||||||  |||| | || |||||||||||| |||||||| |||| ||||||||||||| ||||| ||||||    
T  45368837 gggcactctttaaggattccaaaaaaagaaattattttataaaaaagttaaatatttcaattttcgatgcaatgatta 45368760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 4734631 - 4734696
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaa 262  Q
    ||||||||||||||||| |||||       |||||||||||||||||||||||| |||||||||||    
T  4734631 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaa 4734696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 71 - 155
Target Start/End: Complemental strand, 20169827 - 20169743
Alignment:
Q  71 ctctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||| |||||| ||||| ||||||||| ||||||| |  || |||||| ||||| ||||||||||||| ||| |||||||    
T  20169827 ctctttaaagattctaaaagaataaattattttataaaaagtcaaaatatttcgatttttaatgcattgattatatatattttca 20169743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 33636713 - 33636789
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||||| ||||||| ||| |||||||||||||||||||| | || | ||||||||| ||||||| | ||||||    
T  33636713 cactctttaagcattctaaaaggagaaattatttcataaaaaagtcaaatgtttcaatttccaatgcaataattaca 33636789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 39932788 - 39932721
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgca 136  Q
    |||||||||||||||||| |||||| ||| ||| ||||||||| | || ||||||||||||| |||||    
T  39932788 cactctttaaacattctaaaagaagtaataattccataaaaaagtcaaatatttcaattttccatgca 39932721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 3404748 - 3404785
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  3404748 ccctcccctcccctccaaactcccaaacaaagccttag 3404785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 44960495 - 44960544
Alignment:
Q  106 aaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||| |||||| |||| ||| |||||||||||||||||||||||||||||    
T  44960495 aaaatatttaaatattacaaatttcaatgcattgattacataaattttca 44960544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Complemental strand, 40380228 - 40380161
Alignment:
Q  88 aagaagaaattatttcataaaaaat--ttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||||||||||||||||||||   | || ||||||||||||| ||||||||||| ||||| ||||    
T  40380228 aagaagaaattatttcataaaaaaaaatcaaatatttcaattttcgatgcattgattgcataattttt 40380161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 43429684 - 43429764
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaa 149  Q
    ||||||||||| |||||  | |||||||||||||| ||||||| | ||  | ||||||||||||| ||||||| |||||||    
T  43429684 cactctttaaagattcttaatgaagaaattatttcttaaaaaagtcaaaaacttcaattttcaatccattgataacataaa 43429764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 2098155 - 2098240
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    |||||||||||||| ||| || ||||||||||| || |||| |||| | || |||||||||||| ||  |||||||||||||||||||    
T  2098155 gggcactctttaaa-attttaaaagaagaaatt-ttacatacaaaagtcaaatatttcaatttttaacacattgattacataaatttt 2098240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 120 - 155
Target Start/End: Complemental strand, 9629879 - 9629844
Alignment:
Q  120 tttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||||||||||||||||| ||||||||    
T  9629879 tttcaattttcaatgcattgattacattaattttca 9629844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 2474901 - 2474968
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagc 264  Q
    |||||||||||||| || |||||       ||||| |||||||||||||||||| |||||||||||||    
T  2474901 tatttcttccacttactccttcctttttttcaaaatcctcccctcccctccaaactcccaaacaaagc 2474968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 155
Target Start/End: Original strand, 22209401 - 22209487
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||||||| |||| || |||||| ||||||| | ||||||| |||| |||||  |||| |||  ||||||||||||| |||||||    
T  22209401 cactctttaagcattttaaaagaagcaattattccttaaaaaagttaaatattttgatttccaagacattgattacatatattttca 22209487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 145
Target Start/End: Original strand, 27055903 - 27055981
Alignment:
Q  67 ggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||||||| |||| || || |||||||||||||| || ||| |||| | |||| |||| ||||| ||||||||||    
T  27055903 ggcactctttaagcattttaaaataagaaattatttcaaaagaaagttaaatgtttcgatttccaatgtattgattaca 27055981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 145
Target Start/End: Complemental strand, 28313625 - 28313572
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||| ||||||||||  ||||| ||||||||||||||||| ||||||||||    
T  28313625 aagaaatt-tttcataaaatttttaaatatttcaattttcaatgtattgattaca 28313572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 36819794 - 36819708
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcat-aaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    |||||||||||| |||||| ||||| ||||||||| || |||||| | || ||||| |||||| |||||||| |||| ||| |||||    
T  36819794 gcactctttaaagattctaaaagaaaaaattattttataaaaaaaatcaaatattttaatttttaatgcattaattatatatatttt 36819708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 39691225 - 39691139
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||||||| ||||| |||  || ||||||||   ||||||| | || || |||||||||||||||||||| |||| |||||||||    
T  39691225 cactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttca 39691139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 127
Target Start/End: Original strand, 44173778 - 44173836
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaatt 127  Q
    ||||||||||||| |||| || || |||||||||| ||||||| |||| ||||||||||    
T  44173778 cactctttaaacaatctaaaataaaaaattatttcttaaaaaagttaaatatttcaatt 44173836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 145
Target Start/End: Original strand, 11041085 - 11041138
Alignment:
Q  92 agaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||| ||| ||||||||| |||| |||||||||||||||| || ||||||||    
T  11041085 agaaatcattccataaaaaagttaaatatttcaattttcaatacaatgattaca 11041138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 34148432 - 34148395
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  34148432 ccctcccttcccctccaaactcccaaacaaagccttag 34148395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 37659385 - 37659348
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||| |||||||||||||| |||||||||||||||    
T  37659385 ccctcccttcccctccaaattctcaaacaaagccttag 37659348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 5968418 - 5968370
Alignment:
Q  63 ccagggcactctttaaacattctacaagaagaaattatttcataaaaaa 111  Q
    |||||||||||||||||||||||| || ||| |||||||| | ||||||    
T  5968418 ccagggcactctttaaacattctaaaacaagcaattattttaaaaaaaa 5968370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 15108409 - 15108445
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaag 263  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  15108409 caaaacccttccctcccctccaaactcccaaacaaag 15108445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 138
Target Start/End: Complemental strand, 29487177 - 29487101
Alignment:
Q  63 ccagggcactctttaaacattctacaagaagaaattatttcataaaaaa-tttaagtatttcaattttcaatgcatt 138  Q
    |||||||||||||| || |||||| |  |||||||||||   ||||||| ||||| || ||||||||||||||||||    
T  29487177 ccagggcactcttttaatattctaaattaagaaattattctttaaaaaagtttaaatagttcaattttcaatgcatt 29487101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 33910733 - 33910792
Alignment:
Q  72 tctttaaacattctacaagaagaaattatttcat--aaaaaatttaagtatttcaatttt 129  Q
    ||||||| |||| || ||||||||||||||||||  |||||| |||| ||||||||||||    
T  33910733 tctttaagcattttaaaagaagaaattatttcataaaaaaaagttaaatatttcaatttt 33910792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 36906418 - 36906454
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  36906418 ccctcccttcccctccaaactcccaaacaaagcctta 36906454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 48; Significance: 2e-18; HSPs: 26)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 8761922 - 8762009
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||  |||||| || |||||||||||  |||||||| |||| ||||||||||||||||| |||||| ||||||||||||||    
T  8761922 cactctttaaggattctaaaaaaagaaattattctataaaaaagttaaatatttcaattttcaatgtattgatgacataaattttcaa 8762009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 27016663 - 27016753
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||||| ||||| | |||||||||||||| ||||||||| | ||  |||||||||| |||||||| |||||||| |||||||||    
T  27016663 gggcactctttaagcattccaaaagaagaaattattccataaaaaagtcaaaaatttcaatttccaatgcatcgattacattaattttcaa 27016753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 70 - 128
Target Start/End: Original strand, 37976444 - 37976502
Alignment:
Q  70 actctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattt 128  Q
    ||||||||||||||||| |||||||||||||||||||||||| | || |||||||||||    
T  37976444 actctttaaacattctaaaagaagaaattatttcataaaaaaatcaaatatttcaattt 37976502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 195 - 266
Target Start/End: Complemental strand, 32760705 - 32760634
Alignment:
Q  195 tatatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||||| |||| |||||       |||||||||||||||||||||||| |||||||||||||||    
T  32760705 tatatttcttccacctgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcct 32760634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 145
Target Start/End: Original strand, 12448688 - 12448742
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||||||  |||||||| |||| ||||||||||||||||||| ||||||||    
T  12448688 aagaaattattcaataaaaaagttaaatatttcaattttcaatgcaatgattaca 12448742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 38928837 - 38928908
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||| |||||       ||||||||||||||||||||| || |||||||||||| ||||    
T  38928837 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctcccaactcccaaacaaagtctta 38928908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 61 - 145
Target Start/End: Original strand, 19692710 - 19692795
Alignment:
Q  61 ccccagggcactctttaaacattctacaagaagaaattatttcataaaaaattt-aagtatttcaattttcaatgcattgattaca 145  Q
    |||| |||||||||||||| |||  | |||||||||||| || ||||||||  | || |||||| |||||||||||||||||||||    
T  19692710 ccccggggcactctttaaagatttcaaaagaagaaattaatttataaaaaaagtcaaatatttcgattttcaatgcattgattaca 19692795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 70 - 155
Target Start/End: Original strand, 35395184 - 35395269
Alignment:
Q  70 actctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||||||  |||| | ||||||||| ||||| |||||||| | || ||||| ||||||| |||||||||||||| | |||||||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgattacacatattttca 35395269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 31672398 - 31672494
Alignment:
Q  61 ccccagggcactctttaaacattctacaagaagaaattatttcataaaaaattt-aagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||| ||||||||||||| ||||| | ||| ||||| |||| |||||||||  | || | ||||||||| |||||||||||||||| ||| ||||||    
T  31672398 ccccggggcactctttaagcattccaaaaggagaaactattccataaaaaaagtcaaatgtttcaatttccaatgcattgattacaaaaaatttcaa 31672494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 144
Target Start/End: Complemental strand, 32017538 - 32017454
Alignment:
Q  60 accccagggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattac 144  Q
    ||||| |||||||||||||||||   | || ||| |||||||   ||||||| | || |||||||||||||||||||||||||||    
T  32017538 accccggggcactctttaaacatatcaaaacaagcaattattctttaaaaaagtaaaatatttcaattttcaatgcattgattac 32017454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 35700966 - 35700930
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||||| |||||||||||||||||    
T  35700966 ccctcccctcccctccaaactcccaaacaaagcctta 35700930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 26663623 - 26663706
Alignment:
Q  62 cccagggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||| || ||||| ||||||| || ||||||||||||  ||||||| | || |||||| |||| ||||| ||||||||||    
T  26663623 cccagggcgctttttaagcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattaca 26663706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 145
Target Start/End: Original strand, 26935218 - 26935301
Alignment:
Q  62 cccagggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||| || ||||| ||||||| || ||||||||||||  ||||||| | || |||||| |||| ||||| ||||||||||    
T  26935218 cccagggcgctttttaagcattctaaaataagaaattattttttaaaaaagtcaaatatttcgatttccaatgtattgattaca 26935301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 27650919 - 27650833
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||||||||| | || |||||||||||  |||||||| |||| ||||| || |||| || |||| |||||||||||| ||||    
T  27650919 cactctttaaacattccaaaaaaagaaattattatataaaaaagttaaatattttaa-tttcgatacattaattacataaattatcaa 27650833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 61 - 155
Target Start/End: Original strand, 31889602 - 31889697
Alignment:
Q  61 ccccagggcactctttaaacattctacaagaagaaattatttcat-aaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||| | |||||||||  |||||| |||||||||||| || || |||||| | || |||||||||||  ||||||||||||||| | |||||||    
T  31889602 ccccagagtactctttaacgattctaaaagaagaaattaatttataaaaaaagtaaaatatttcaatttctaatgcattgattacacatattttca 31889697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 38289534 - 38289573
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||| ||||||||||||||||||| |||||||||||||||    
T  38289534 caaatccctcccctcccctccaaactcccaaacaaagcct 38289573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 4841557 - 4841523
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||||| ||||||||||||||||||    
T  4841557 tcccctcccctccaaactcccaaacaaagccttag 4841523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 91 - 149
Target Start/End: Complemental strand, 13978721 - 13978663
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaa 149  Q
    ||||||||||||| ||||||| ||||  | |||||||| ||||||||||||| ||||||    
T  13978721 aagaaattatttcttaaaaaagttaaaaacttcaatttccaatgcattgatttcataaa 13978663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 14475114 - 14475024
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||| ||||| || |||| || ||||||||||||||  |||||||  | || |||||||||||   |||| ||||||||||||||||||||    
T  14475114 gggctctcttcaagcattttaaaagaagaaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacataaattttcaa 14475024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 37508558 - 37508600
Alignment:
Q  227 caaaaccctcccctcccc-tccaaattcccaaacaaagcctta 268  Q
    |||||||||||||||||| |||||| |||||||||||||||||    
T  37508558 caaaaccctcccctccccctccaaactcccaaacaaagcctta 37508600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 38120340 - 38120381
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    |||||||||||| ||||||||||| ||||||| |||||||||    
T  38120340 caaaaccctcccatcccctccaaactcccaaagaaagcctta 38120381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 4649157 - 4649189
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||| ||||||||||||||||||    
T  4649157 ccctcccctccaaactcccaaacaaagccttag 4649189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 12229638 - 12229674
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||||| ||||||||| |||||||    
T  12229638 ccctcccctcccctccaaactcccaaacagagcctta 12229674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 13450703 - 13450739
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    ||||||||||||||||  |||||||||||||||||||    
T  13450703 tcccctcccctccaaacacccaaacaaagccttagtg 13450739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 146
Target Start/End: Complemental strand, 34032204 - 34032124
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacat 146  Q
    ||||||||||||| ||||||| || ||| |||||||   ||||||| |||| |||||||||||  || ||| |||||||||    
T  34032204 gggcactctttaagcattctaaaataagtaattattctttaaaaaagttaaatatttcaatttcaaaggcaatgattacat 34032124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 35515929 - 35516004
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||| ||||||||||||| |||||||||||||| | |  |||| | || ||||| |||||||||| |||||||||||    
T  35515929 cactttttaaacattctaaaagaagaaattatt-cgttgaaaagtcaaatatttaaattttcaatacattgattaca 35516004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 37)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 69 - 156
Target Start/End: Complemental strand, 5962076 - 5961987
Alignment:
Q  69 cactctttaaacattctacaagaagaaat-tatttcataaaaaat-ttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||| ||||||| |||||||||  |||| |||||||||  |||| ||||||||||| |||||||||||||||||||||||||||    
T  5962076 cactctttaagcattctaaaagaagaaaaatattccataaaaaaaattaaatatttcaatttccaatgcattgattacataaattttcaa 5961987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 67 - 156
Target Start/End: Complemental strand, 6761839 - 6761750
Alignment:
Q  67 ggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||||| ||||| | ||||| |||| |||  |||||||| | || ||||||||||| |||||||||||||||||||||||||||    
T  6761839 ggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgattacataaattttcaa 6761750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 42966951 - 42967039
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaat-ttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||  || ||| ||||||||||||||||||||||||  |||| ||||||||||  | |||||||||||||||||||||||||    
T  42966951 cactctttaagaatactaaaagaagaaattatttcataaaaaaagttaaatatttcaattcccgatgcattgattacataaattttcaa 42967039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 8773787 - 8773693
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaagtta 160  Q
    |||||||||||||| |||||| ||||||||||||||| |||||||| | || |||||  ||||   |||||||||||||||| ||||||| ||||    
T  8773787 gggcactctttaaagattctaaaagaagaaattattttataaaaaagtcaaatattttgatttctgatgcattgattacatatattttcatgtta 8773693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 30312540 - 30312611
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||| |||||       |||||||||||||||||||||||| |||||||||||||||||    
T  30312540 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcctta 30312611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 44137098 - 44137023
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagccttagtgt 272  Q
    ||||||||||| ||||| |||||       |||||||||||||||||||||||| |||||||||||||||||||||    
T  44137098 tatttcttccatttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagccttagtgt 44137023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 8789851 - 8789942
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaagtta 160  Q
    ||||||||||| |||||| ||||||||||||||| |||||||| |||| |||||  ||||   |||||||||||||| | ||||||| ||||    
T  8789851 cactctttaaagattctaaaagaagaaattattttataaaaaagttaaatattttgatttctgatgcattgattacacatattttcatgtta 8789942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 38293830 - 38293758
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||||||  ||||       |||||||||||||||||||||||| ||||||||||||||||||    
T  38293830 tatttcttccacttgctcattccttttttccaaaaccctcccctcccctccaaactcccaaacaaagccttag 38293758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 4238436 - 4238350
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||  |||| | ||||||||||||||| |||||||| | || |||||| |||||| |||||||||||||| | |||||||    
T  4238436 cactctttaaggattcaaaaagaagaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttca 4238350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 152
Target Start/End: Original strand, 4616853 - 4616916
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattt 152  Q
    |||| |||||||||||||||||| || || |||| ||||||||||||||||||||||||| ||||    
T  4616853 aagatgaaattatttcataaaaagttaaa-tattacaattttcaatgcattgattacatagattt 4616916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 69 - 133
Target Start/End: Complemental strand, 33276004 - 33275940
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaat 133  Q
    |||||||||| ||||||| || ||||||||||||  ||||||| |||| ||||||||||||||||    
T  33276004 cactctttaagcattctaaaacaagaaattattttttaaaaaagttaaatatttcaattttcaat 33275940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 8411096 - 8411135
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  8411096 caaaaccctcccctcccctccaaactcccaaacaaagcct 8411135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 232 - 271
Target Start/End: Complemental strand, 18780288 - 18780249
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  18780288 ccctcccctcccctccaaactcccaaacaaagccttagtg 18780249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 68 - 155
Target Start/End: Complemental strand, 42924529 - 42924442
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||| ||||||| |||||| ||||||||   |||||| | || ||||||||||||||| | |||||||||||  |||||||    
T  42924529 gcactctttaagcattctaaaagaagtaattatttttaaaaaaaatcaaatatttcaattttcaacgtattgattacatgcattttca 42924442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 12075636 - 12075546
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||||| ||| | | ||||||||| ||||||||| |||| | || ||||||||||| ||||| |||  |||||||| |||||||    
T  12075636 gggcactctttaagcataccaaaagaagaaactatttcatacaaaagtcaaatatttcaatttccaatgtattagttacataagttttcaa 12075546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 91 - 153
Target Start/End: Original strand, 13197268 - 13197329
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    |||||||||||||||||||| |  || |||||||||||| |||||||| ||||||||||||||    
T  13197268 aagaaattatttcataaaaagtcaaa-tatttcaatttttaatgcattaattacataaatttt 13197329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 272
Target Start/End: Complemental strand, 19382797 - 19382752
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagccttagtgt 272  Q
    ||||| |||||||||||||||||| |||||||||||||||| ||||    
T  19382797 caaaaacctcccctcccctccaaactcccaaacaaagcctttgtgt 19382752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 69 - 154
Target Start/End: Complemental strand, 44941192 - 44941107
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttc 154  Q
    ||||||||||  |||||| ||||||||| ||| | |||||||| ||||  ||||| |||| | |||||||||||||||| ||||||    
T  44941192 cactctttaaggattctaaaagaagaaagtatgttataaaaaagttaaagatttcgatttccgatgcattgattacatatattttc 44941107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 13766108 - 13766140
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||||||||||||||||||||||    
T  13766108 ccctcccctccaaattcccaaacaaagccttag 13766140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 271
Target Start/End: Complemental strand, 16625663 - 16625627
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    |||||||||||||||| ||||||||||||||||||||    
T  16625663 tcccctcccctccaaactcccaaacaaagccttagtg 16625627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 725901 - 725829
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||| ||| ||||       |||||||||||||||||||||||| |||| || ||||||||||    
T  725901 tatttcttccacttacttattcctttttttcaaaaccctcccctcccctccaaactcccgaaaaaagccttag 725829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 70 - 145
Target Start/End: Complemental strand, 2826066 - 2825991
Alignment:
Q  70 actctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||| ||| ||| || ||||||||||||  ||||||| | || |||||| |||| ||||||||||||||||    
T  2826066 actctttaagcatactaaaataagaaattattttttaaaaaagtaaaatatttcgatttccaatgcattgattaca 2825991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 68 - 155
Target Start/End: Original strand, 8964386 - 8964473
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||| ||||| ||||||| |  ||| |||||||   ||||||| | || ||||||||||| |||||||||||||||| |||||||||    
T  8964386 gcactgtttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaattttca 8964473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 11950229 - 11950267
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagt 270  Q
    ||||||||||||||||||| | |||||||||||||||||    
T  11950229 ccctcccctcccctccaaacttccaaacaaagccttagt 11950267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 31550112 - 31550078
Alignment:
Q  233 cctcccctcccctccaaattcccaaacaaagcctt 267  Q
    |||||| ||||||||||||||||||||||||||||    
T  31550112 cctcccttcccctccaaattcccaaacaaagcctt 31550078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 41099967 - 41099933
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||| ||||||||||||||||||||||||    
T  41099967 ccctcccctctcctccaaattcccaaacaaagcct 41099933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 155
Target Start/End: Original strand, 3882608 - 3882697
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||| ||||||| || ||| |||||||   ||||||  | || ||||||  |||||||||||||||||||| | |||||||    
T  3882608 gggcactctttaagcattctaaaataagcaattattctttaaaaaggtcaaatatttcggttttcaatgcattgattacacacattttca 3882697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 8991136 - 8991173
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||||||||||||||| ||||||||||||| ||||    
T  8991136 ccctcccctcccctccaaactcccaaacaaagcattag 8991173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 15803404 - 15803437
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagcctta 268  Q
    |||||||||||||||| |||||||||||||||||    
T  15803404 tcccctcccctccaaactcccaaacaaagcctta 15803437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 145
Target Start/End: Complemental strand, 34355420 - 34355348
Alignment:
Q  72 tctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||  |||||| |||||||||||  ||||||||||| | || |||||||||||| |||| ||||||||||    
T  34355420 tctttaagaattctaaaagaagaaattgcttcataaaaaa-tcaaatatttcaatttttaatgtattgattaca 34355348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Complemental strand, 41655255 - 41655222
Alignment:
Q  236 cccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||||||||||| ||||||||||||||||||    
T  41655255 cccctcccctccaaactcccaaacaaagccttag 41655222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 3199600 - 3199536
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaa 132  Q
    |||||||||||  |||||| || |||||||||||| |||||||||| || |||||  ||||||||    
T  3199600 gcactctttaataattctaaaataagaaattattttataaaaaattcaaatattttgattttcaa 3199536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 11278757 - 11278797
Alignment:
Q  98 tatttcataaaaaatttaagtatttcaattttcaatgcatt 138  Q
    ||||| |||||||| |||| |||||||||||||||||||||    
T  11278757 tattttataaaaaagttaaatatttcaattttcaatgcatt 11278797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 14008181 - 14008145
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  14008181 ccctcccttcccctccaaactcccaaacaaagcctta 14008145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 29880690 - 29880654
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaag 263  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  29880690 caaaaccctcccctccgctccaaaatcccaaacaaag 29880654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Complemental strand, 32243391 - 32243355
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaag 263  Q
    |||||||||||||||||||||||| ||||||| ||||    
T  32243391 caaaaccctcccctcccctccaaactcccaaaaaaag 32243355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 269
Target Start/End: Complemental strand, 42644574 - 42644534
Alignment:
Q  229 aaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||||||| ||| ||||||||| ||||||||    
T  42644574 aaaccctcccctcccctcaaaactcccaaacagagccttag 42644534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 45)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 91 - 155
Target Start/End: Complemental strand, 41370257 - 41370193
Alignment:
Q  91 aagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||||||||||  |||||| |||| |||||||||||||||||||||||||||| |||||||||    
T  41370257 aagaaattatttctcaaaaaagttaaatatttcaattttcaatgcattgattacacaaattttca 41370193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 156
Target Start/End: Original strand, 54543568 - 54543652
Alignment:
Q  72 tctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||| |||||| ||| ||||||||||||||||||||   || | ||||||||| ||||||||||||||||||| |||||||    
T  54543568 tctttaaatattctaaaaggagaaattatttcataaaaaagcaaaatgtttcaatttccaatgcattgattacataacttttcaa 54543652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 34235904 - 34235995
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaattt-aagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||| |||||||||||| || ||||| ||||||||| ||||||||  | ||  |||||||||||||||||||||||||||| |||||||||    
T  34235904 gggcattctttaaacattttaaaagaataaattattttataaaaaaagtcaaaaatttcaattttcaatgcattgattacattaattttcaa 34235995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 31871147 - 31871083
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattt 152  Q
    ||||||||||||||| |||||||| | || ||||||||||| | |||||||||||||||||||||    
T  31871147 aagaagaaattattttataaaaaagtaaaatatttcaatttccgatgcattgattacataaattt 31871083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 40666965 - 40667048
Alignment:
Q  70 actctttaaacattctacaagaagaaattatttcataa-aaaatttaagtatttcaattttcaatgcattgattacataaattt 152  Q
    ||||||||| ||||||| |||||||||||||| ||||| |||| | ||  |||||||||| ||||||||||||||||| |||||    
T  40666965 actctttaagcattctaaaagaagaaattattccataacaaaagtaaataatttcaatttccaatgcattgattacattaattt 40667048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 13270408 - 13270475
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagc 264  Q
    ||||||||||||||||| |||||       |||||||||||||||||||||||| |||||||||||||    
T  13270408 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactcccaaacaaagc 13270475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 35180719 - 35180629
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||||| |||||   ||| |||||||||| |||| |||| | || | |||||||||||||| |||||||||||||| |||||||    
T  35180719 gggcactctttaagcattcctaaaggagaaattattccatagaaaagtcaaatgtttcaattttcaatacattgattacataatttttcaa 35180629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 41844353 - 41844311
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||||||||||||| ||||||||||||||||||    
T  41844353 caaaaccctcccctcccctccaaactcccaaacaaagccttag 41844311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 228 - 268
Target Start/End: Complemental strand, 904112 - 904072
Alignment:
Q  228 aaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  904112 aaaaccctcccctcccctccaaactcccaaacaaagcctta 904072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 23230347 - 23230272
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcat-aaaaaatttaagtatttcaattttcaatgcattgatta 143  Q
    |||||||||| ||||| | ||| |||||||||| ||| |||||| |||| | ||||||||||||||||||||||||    
T  23230347 cactctttaagcattccaaaaggagaaattattccatgaaaaaagttaaatgtttcaattttcaatgcattgatta 23230272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 155
Target Start/End: Complemental strand, 44690379 - 44690288
Alignment:
Q  64 cagggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||||||||| ||| || ||| |||||| |  ||||||| |||| |||||| |||||||||| | | |||||||| |||||||    
T  44690379 cagggcactctttaaacatactaaaataagtaattatcttttaaaaaagttaaatatttcgattttcaatgtaataattacatatattttca 44690288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 7627951 - 7628041
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||||| ||||| | ||| |||||||||| |||| |||| | || | ||||||||| |||| ||||| |||||||| |||||||    
T  7627951 gggcactctttaagcattccaaaaggagaaattattccatagaaaagtcaaatgtttcaatttccaatacattggttacataacttttcaa 7628041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 155
Target Start/End: Complemental strand, 41956549 - 41956455
Alignment:
Q  61 ccccagggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||| |||||||||| || || | || |||||| ||||   ||| |||||||| ||||||||||||||| |||||||||||| || ||||||    
T  41956549 ccccaggacactctttaagcaatccaaaataagaaagtattctttaagaaatttaaatatttcaattttcaacgcattgattacacaatttttca 41956455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 155
Target Start/End: Complemental strand, 44647996 - 44647906
Alignment:
Q  65 agggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||||| |||| | ||||||||| ||||| |||| ||| | || ||||||||||| | ||||||| |||||| | |||||||    
T  44647996 agggcactctttaaagattccaaaagaagaaactattttataataaaatcaaatatttcaatttccgatgcattaattacacatattttca 44647906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 38365935 - 38365898
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  38365935 ccctcccctcccctccaaactcccaaacaaagccttag 38365898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 49144777 - 49144842
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||||||||||| |||||||| ||||  ||||  |||||| |||||||||||||||| |||||    
T  49144777 aagaagaaattattttataaaaaagttaaaaattttgattttcgatgcattgattacatatatttt 49144842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 1696280 - 1696212
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||| |||||| |||||||||   || ||||||||||| | |||||||||||||||| ||||||||    
T  1696280 aagaagatattattccataaaaaagacaaatatttcaatttccgatgcattgattacatacattttcaa 1696212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 36151535 - 36151575
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcctt 267  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  36151535 caaaaccctcccctcccctccaaactctcaaacaaagcctt 36151575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 40480281 - 40480201
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaa 149  Q
    ||||||||||  || ||| ||||||||||||| |||||||||| | || ||||||||||  | || |||||||||||||||    
T  40480281 cactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgattacataaa 40480201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 145
Target Start/End: Complemental strand, 53737913 - 53737829
Alignment:
Q  61 ccccagggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||||||||||||| | ||| | || |||||||||||   ||||||||| || |||||| |||| ||||||||||| ||||    
T  53737913 ccccagggcactctttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatgcattgaataca 53737829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 7182366 - 7182405
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  7182366 ccctcccctcccctccaaactcccaaacaaagcctaagtg 7182405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 266
Target Start/End: Original strand, 17622629 - 17622668
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||||||||||||||  |||||||||||||||    
T  17622629 caaaaccctcccctcccctccaacctcccaaacaaagcct 17622668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 88 - 155
Target Start/End: Original strand, 33982439 - 33982506
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||| ||||||||| |||||||| |||| |||||| |||| | || ||||||||||||| |||||||    
T  33982439 aagaaaaaattattttataaaaaagttaaatatttcgatttccgatacattgattacatatattttca 33982506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 88 - 142
Target Start/End: Complemental strand, 5388001 - 5387947
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgatt 142  Q
    ||||||||||||||| |  ||||| |||| |||||| ||||||||||||||||||    
T  5388001 aagaagaaattattttaataaaaaattaaatatttcgattttcaatgcattgatt 5387947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 69 - 143
Target Start/End: Complemental strand, 11875538 - 11875465
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgatta 143  Q
    |||||||||||  || || || |||||||||||| ||| |||| |||| ||||| ||||||||||||||||||||    
T  11875538 cactctttaaagcttttaaaaaaagaaattattttatacaaaaattaaatattt-aattttcaatgcattgatta 11875465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 68 - 153
Target Start/End: Original strand, 12329286 - 12329372
Alignment:
Q  68 gcactctttaaacattctacaagaagaaattatttcataaaaaattt-aagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||||||| ||||  | ||| |||||||||| |||||||||  | || |||||||||||  |||||||||||||||||| ||||    
T  12329286 gcactctttaagcatttcaaaaggagaaattattccataaaaaaagtcaaatatttcaatttcaaatgcattgattacataattttt 12329372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 270
Target Start/End: Original strand, 35959400 - 35959434
Alignment:
Q  236 cccctcccctccaaattcccaaacaaagccttagt 270  Q
    ||||||||||||||| |||||||||||||||||||    
T  35959400 cccctcccctccaaactcccaaacaaagccttagt 35959434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 39727667 - 39727578
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||| ||||||  |||||| ||||| ||||||||  ||||||| |  || |||||||||||   |||||||||||||||||||||||||    
T  39727667 gggcacactttaaggattctaaaagaataaattattctataaaaagtcaaa-tatttcaatttctgatgcattgattacataaattttcaa 39727578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 41363987 - 41364021
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||||| |||||||||||||||    
T  41363987 ccctcccctcccctccaaactcccaaacaaagcct 41364021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 155
Target Start/End: Original strand, 42844062 - 42844124
Alignment:
Q  93 gaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||||||| |||||||| | || |||||| |||||| |||||||||||||| | |||||||    
T  42844062 gaaattattttataaaaaaatcaaatatttcgattttcgatgcattgattacacatattttca 42844124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Complemental strand, 45899297 - 45899259
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagt 270  Q
    ||||||||||||||||||| ||||||||| |||||||||    
T  45899297 ccctcccctcccctccaaactcccaaacagagccttagt 45899259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Complemental strand, 49936430 - 49936388
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||| ||||||||||| ||||||| ||||||||||    
T  49936430 caaaaccctcccttcccctccaaactcccaaagaaagccttag 49936388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 156
Target Start/End: Original strand, 53919860 - 53919950
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||||| ||||  | ||||| ||||||||  |||||||| | ||  |||||||||| | ||||||||||| ||| |||||||||    
T  53919860 gggcactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattgattgcattaattttcaa 53919950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 6316920 - 6316831
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||||||||||||| |||  | |||||||||| |||| ||||||||   ||  ||||  ||||||||||||||||||||| | |||||||    
T  6316920 gggcactctttaaagatttcaaaagaagaaataattttataaaaaaggcaaagattttgattttcaatgcattgattacacatattttca 6316831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 66 - 155
Target Start/End: Complemental strand, 12103954 - 12103865
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||| |||||  |||||| ||||| |||||||||||||||||| | || || ||| |||| |||  ||||||||||| | |||||||    
T  12103954 gggcactttttaaggattctaaaagaataaattatttcataaaaaagtcaaataattcgatttccaaaacattgattacacatattttca 12103865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 70 - 111
Target Start/End: Original strand, 28165388 - 28165429
Alignment:
Q  70 actctttaaacattctacaagaagaaattatttcataaaaaa 111  Q
    |||||||||| |||||| ||||||||||||||| ||||||||    
T  28165388 actctttaaagattctaaaagaagaaattattttataaaaaa 28165429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 31187269 - 31187306
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  31187269 ccctcccgtcccctccaaactcccaaacaaagccttag 31187306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 268
Target Start/End: Complemental strand, 47669724 - 47669683
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  47669724 caaaaccctcccctccccttcaaactcccaaacaaaacctta 47669683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 49936726 - 49936759
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcc 265  Q
    ||||||||||||||||||| ||||||||||||||    
T  49936726 ccctcccctcccctccaaactcccaaacaaagcc 49936759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 268
Target Start/End: Original strand, 55510136 - 55510169
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagcctta 268  Q
    |||||||||||||||| |||||||||||||||||    
T  55510136 tcccctcccctccaaactcccaaacaaagcctta 55510169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 155
Target Start/End: Original strand, 2076838 - 2076874
Alignment:
Q  119 atttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||||||||||||||||| ||| |||||||    
T  2076838 atttcaattttcaatgcattgattatatatattttca 2076874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 16555962 - 16556046
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||||||| |||||| |   ||||| |||||| || || ||| || |||| ||| ||||||||||||||||||| |||||||    
T  16555962 cactctttaaaaattctaaatttagaaaatatttcttacaacattcaaatattacaaatttcaatgcattgattacacaaatttt 16556046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 32948692 - 32948728
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    |||||||||||| |||||| |||||||||||||||||    
T  32948692 ccctcccctcccttccaaactcccaaacaaagcctta 32948728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 145
Target Start/End: Original strand, 42197031 - 42197106
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||||| |||||| ||||||||||||||| || ||||| | || |||||  |||||| || |||||||||||    
T  42197031 cactctttaaa-attctaaaagaagaaattattttattaaaaaatcaaatattttgattttcgatacattgattaca 42197106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Original strand, 48830985 - 48831017
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||| ||||||||||||||||||    
T  48830985 ccctcccctccaaactcccaaacaaagccttag 48831017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 61 - 156
Target Start/End: Original strand, 7465464 - 7465559
Alignment:
Q  61 ccccagggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||| ||||||| |||||  |||||  ||||||||||| || ||||||||| | || ||||||||||| | |||||||||||||||||||||||||    
T  7465464 cccccgggcactttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattacataaattttcaa 7465559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 31702854 - 31702775
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    |||||||||||||  |||  | ||||||||||||||| |||||||| |||||||||| |||||  |||||||||||||||    
T  31702854 gggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgattaca 31702775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 30396268 - 30396329
Alignment:
Q  94 aaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||| |||||||||  || |||| ||||||||||||||||||||||||||||||||||    
T  30396268 aaattattttataaaaaatcaaa-tattacaattttcaatgcattgattacataaattttcaa 30396329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 92 - 156
Target Start/End: Complemental strand, 27843295 - 27843230
Alignment:
Q  92 agaaattatttcat-aaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||||||| |||||| | || ||||||||||||||||||| | |||||||||||||||||    
T  27843295 agaaattatttcattaaaaaagtcaaatatttcaattttcaatgcactcattacataaattttcaa 27843230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 151
Target Start/End: Complemental strand, 10346080 - 10346023
Alignment:
Q  94 aaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatt 151  Q
    |||||||||  ||||||| ||||  | |||||||||||||||||||||||||||||||    
T  10346080 aaattattttttaaaaaagttaaaaacttcaattttcaatgcattgattacataaatt 10346023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 67 - 156
Target Start/End: Original strand, 11675630 - 11675722
Alignment:
Q  67 ggcactctttaaacattctacaagaagaaattat--ttca-taaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||||| ||||||| |||||||||||||  |||| ||||||| | ||  |||||||||| ||| ||||| ||||||| |||||||||    
T  11675630 ggcactctttaagcattctaaaagaagaaattattattcattaaaaaagtcaaaaatttcaatttccaacgcattaattacattaattttcaa 11675722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 263
Target Start/End: Original strand, 26574530 - 26574596
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaag 263  Q
    ||||||||||||||||| |||||       |||||||||||||||||||||||| || |||||||||    
T  26574530 tatttcttccacttgctccttccttttttccaaaaccctcccctcccctccaaactctcaaacaaag 26574596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 111
Target Start/End: Complemental strand, 6048387 - 6048339
Alignment:
Q  63 ccagggcactctttaaacattctacaagaagaaattatttcataaaaaa 111  Q
    ||||||||||||||||| |||||| |||||||||||| || ||||||||    
T  6048387 ccagggcactctttaaaaattctaaaagaagaaattaatttataaaaaa 6048339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 271
Target Start/End: Complemental strand, 9104808 - 9104764
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    |||||||||||| |||| |||||| ||||||||||||||||||||    
T  9104808 caaaaccctcccatcccttccaaactcccaaacaaagccttagtg 9104764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 24734828 - 24734759
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||||||||  ||||       |||||||||||| ||||||||||| |||||||||||||||    
T  24734828 tatttcttccacttgctcgttccttttttccaaaaccctcccttcccctccaaactcccaaacaaagcct 24734759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 271
Target Start/End: Original strand, 24735111 - 24735150
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    ||||||||||||||||||| ||||||||||| ||||||||    
T  24735111 ccctcccctcccctccaaactcccaaacaaaaccttagtg 24735150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 2365772 - 2365806
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||||| |||||||||||||||    
T  2365772 ccctcccctcccctccaaactcccaaacaaagcct 2365806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 88 - 145
Target Start/End: Original strand, 12307839 - 12307896
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||||||||| |||||||| | || ||||| |||||||||| |||| ||||||    
T  12307839 aagaagaaattattttataaaaaagtcaaatattttaattttcaatacattaattaca 12307896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 5825561 - 5825597
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  5825561 ccctcccttcccctccaaactcccaaacaaagcctta 5825597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 156
Target Start/End: Original strand, 1511320 - 1511417
Alignment:
Q  60 accccagggcactctttaaacattctacaagaagaaattatttcataaaaaattt-aagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||| ||||||||||||| ||| | | |||||||||||||| ||| |||||| | ||  |||||||||| ||||||||||||||||| |||||||||    
T  1511320 accccggggcactctttaagcatgccaaaagaagaaattattccatcaaaaatgtcaaagatttcaatttccaatgcattgattacattaattttcaa 1511417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 69 - 156
Target Start/End: Original strand, 31419204 - 31419289
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||||| ||||  | | |||||||||||| ||||||||  |||| ||||| ||||||||||| |||||||||||||||||||||    
T  31419204 cactctttaagcatttcaaatgaagaaattattccataaaaa--ttaaatatttaaattttcaatgtattgattacataaattttcaa 31419289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 53433278 - 53433210
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||||||  |||||||| | || ||||| ||||||| |||||||||||||||||||||||||    
T  53433278 aagaagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaattttcaa 53433210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 41571682 - 41571591
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcat-aaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||||||||||| ||||| | |||||||||||||||||| ||||||   ||  ||||||||||  |||||||||||||||| |||||||||    
T  41571682 gggcactctttaagcattccaaaagaagaaattatttcattaaaaaagccaaaaatttcaatttcgaatgcattgattacattaattttcaa 41571591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 30464071 - 30463981
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||||||| |||| ||||| | ||||||||||||||  |||||||| | ||  ||||||||||| ||||||||||||||| ||| ||||||    
T  30464071 gggcactcgttaagcattccaaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgattacaaaaaatttcaa 30463981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 89 - 155
Target Start/End: Original strand, 55110042 - 55110108
Alignment:
Q  89 agaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    |||| ||||||||| |||||||| | || |||||| ||||||||||||||||||||||| |||||||    
T  55110042 agaaaaaattattttataaaaaaatcaaatatttcgattttcaatgcattgattacatatattttca 55110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 88 - 153
Target Start/End: Original strand, 37744995 - 37745060
Alignment:
Q  88 aagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    |||||||| ||||| ||||||||| |||| |||| ||||||| ||||||||||||||| |||||||    
T  37744995 aagaagaatttattccataaaaaaattaaatattacaatttttaatgcattgattacacaaatttt 37745060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 88 - 145
Target Start/End: Complemental strand, 42180967 - 42180908
Alignment:
Q  88 aagaagaaattatttcataaaaaa--tttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||||||||||||||||||||  |||||  |||| ||||||||||||||||||||||    
T  42180967 aagaagaaattatttcataaaaaaaatttaaaaattttaattttcaatgcattgattaca 42180908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 197 - 266
Target Start/End: Original strand, 42583406 - 42583475
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||||||||  ||||       |||||||||||||||||||||||| |||||||||||||||    
T  42583406 tatttcttccacttgctcattccttttttccaaaaccctcccctcccctccaaactcccaaacaaagcct 42583475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 38388704 - 38388783
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattaca 145  Q
    ||||||| |||||| |||||| |||||||||||| || |||||||| | || |||||  ||||||| |||||||||||||    
T  38388704 gggcactatttaaagattctaaaagaagaaattaatttataaaaaagtcaaatattttgattttcattgcattgattaca 38388783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 38526099 - 38526027
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||| ||||||||       |||||| ||||||||||||||||| || |||||||||||||||    
T  38526099 tatttcttccacttacttcttccttttttccaaaactctcccctcccctccaaactctcaaacaaagccttag 38526027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 69 - 136
Target Start/End: Complemental strand, 54866356 - 54866289
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgca 136  Q
    |||||||||| |||| |||||| |||||||||| ||||||||||| || | ||||||||| |||||||    
T  54866356 cactctttaagcattttacaagcagaaattattacataaaaaattcaaatgtttcaatttccaatgca 54866289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 69 - 147
Target Start/End: Complemental strand, 779786 - 779708
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacata 147  Q
    ||||||||||| |||||| ||||| ||||||||| || ||||| |||| |||||  |||| ||||||||| ||||||||    
T  779786 cactctttaaaaattctaaaagaataaattattttatgaaaaagttaaatattttgatttgcaatgcattcattacata 779708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 30132060 - 30132094
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||||||||||||||||||||||||||    
T  30132060 ccctcccctcccctccaaattcccaaacaaagcct 30132094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 94 - 155
Target Start/End: Complemental strand, 19898188 - 19898127
Alignment:
Q  94 aaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||| ||| |||| | || |||||||||||||||||||||||||||| | |||||||    
T  19898188 aaattattttatataaaaatcaaatatttcaattttcaatgcattgattacacatattttca 19898127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 232 - 269
Target Start/End: Complemental strand, 30121374 - 30121337
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  30121374 ccctcccctcccctccaaactcccaaacaaagccttag 30121337  T

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Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 268
Target Start/End: Original strand, 46312586 - 46312627
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    |||||||||||||||||||||||| ||||||||||| |||||    
T  46312586 caaaaccctcccctcccctccaaactcccaaacaaaacctta 46312627  T

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Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 29099167 - 29099255
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaattt-aagtatttcaattttcaatgcattgattacataaatttt 153  Q
    ||||||| ||||| ||||| | |||||||||| ||| |||||||||  | ||  ||||||||||||||| |||||||||||| ||||||    
T  29099167 gggcactttttaagcattccaaaagaagaaatgattccataaaaaaagtcaaaaatttcaattttcaattcattgattacattaatttt 29099255  T

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Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Original strand, 38094453 - 38094533
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaa 149  Q
    |||| ||||| ||||| | |||||||||||||| |||| |||| | || |||||||||||   ||||||||||||||||||    
T  38094453 cactttttaagcattccataagaagaaattattccatataaaagtcaaatatttcaatttctgatgcattgattacataaa 38094533  T

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Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 40119054 - 40119094
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcctt 267  Q
    |||||||||||||||||||||||| || |||||||||||||    
T  40119054 caaaaccctcccctcccctccaaactcgcaaacaaagcctt 40119094  T

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Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 237 - 268
Target Start/End: Original strand, 2420883 - 2420914
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||||||||||||||||||||||||||||    
T  2420883 ccctcccctccaaattcccaaacaaagcctta 2420914  T

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Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 69 - 155
Target Start/End: Complemental strand, 25548310 - 25548223
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaat-ttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||||  | |||| ||||||||| ||||| ||||||||  |||| |||||||||||  ||||||||||||||| | |||||||    
T  25548310 cactctttaaggactctaaaagaagaaaatattttataaaaaaagttaaatatttcaatttctaatgcattgattacacatattttca 25548223  T

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Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 28434526 - 28434592
Alignment:
Q  89 agaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    |||| ||||||||||||||||| |  || |||||  |||||| |||||||||||||||||||||||||    
T  28434526 agaataaattatttcataaaaagtcaaa-tattttgattttcgatgcattgattacataaattttcaa 28434592  T

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Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 232 - 267
Target Start/End: Complemental strand, 38592886 - 38592851
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctt 267  Q
    ||||||||||||||||||| ||||||||||||||||    
T  38592886 ccctcccctcccctccaaactcccaaacaaagcctt 38592851  T

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Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 45555548 - 45555509
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||||||||| ||||||||||| |||||||||||||||    
T  45555548 caaaaccctcccatcccctccaaactcccaaacaaagcct 45555509  T

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Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 153
Target Start/End: Complemental strand, 45566168 - 45566109
Alignment:
Q  94 aaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaatttt 153  Q
    |||||||||  | ||||| |||| ||||||||||||||||| ||| ||||||||||||||    
T  45566168 aaattatttatttaaaaagttaaatatttcaattttcaatgtatttattacataaatttt 45566109  T

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Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Original strand, 32859068 - 32859102
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||||| |||||||||||||||    
T  32859068 ccctcccctcccctccaaactcccaaacaaagcct 32859102  T

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Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 270
Target Start/End: Original strand, 38515466 - 38515504
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttagt 270  Q
    ||||||| ||||||||||||| |||||||||||||||||    
T  38515466 ccctcccttcccctccaaatttccaaacaaagccttagt 38515504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 52620687 - 52620653
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||||| |||||||||||||||    
T  52620687 ccctcccctcccctccaaactcccaaacaaagcct 52620653  T

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Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 247
Target Start/End: Complemental strand, 17642536 - 17642486
Alignment:
Q  197 tatttcttccacttgcttcttccnnnnnnncaaaaccctcccctcccctcc 247  Q
    |||||||||||||||||||||||       |||||||||||||||||||||    
T  17642536 tatttcttccacttgcttcttccttttttccaaaaccctcccctcccctcc 17642486  T

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Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 270
Target Start/End: Original strand, 36185223 - 36185256
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagccttagt 270  Q
    |||||||||||||| |||||||||||||||||||    
T  36185223 ccctcccctccaaactcccaaacaaagccttagt 36185256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 265
Target Start/End: Original strand, 47714852 - 47714885
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcc 265  Q
    ||||||||||||||||||| ||||||||||||||    
T  47714852 ccctcccctcccctccaaactcccaaacaaagcc 47714885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 269
Target Start/End: Original strand, 47789621 - 47789658
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||| ||||||||||| ||||||||||||||||||    
T  47789621 ccctcccttcccctccaaactcccaaacaaagccttag 47789658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 269
Target Start/End: Original strand, 49683167 - 49683208
Alignment:
Q  228 aaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    ||||||||||||||| ||||||| ||||||||||| ||||||    
T  49683167 aaaaccctcccctcctctccaaactcccaaacaaaaccttag 49683208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 94 - 155
Target Start/End: Original strand, 51039775 - 51039836
Alignment:
Q  94 aaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttca 155  Q
    ||||||||  |||||||| | || || |||||||||||||| ||||| ||||||||||||||    
T  51039775 aaattattctataaaaaagtcaaatagttcaattttcaatgaattgaatacataaattttca 51039836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 4824724 - 4824656
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcat 137  Q
    ||||||||||  |||||| |  |||||||||||   |||||||||||| || |||||||||||||||||    
T  4824724 cactctttaaggattctaaattaagaaattattaactaaaaaatttaaatacttcaattttcaatgcat 4824656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 35283319 - 35283355
Alignment:
Q  235 tcccctcccctccaaattcccaaacaaagccttagtg 271  Q
    |||||||||||||||| ||||||||||||||| ||||    
T  35283319 tcccctcccctccaaactcccaaacaaagcctaagtg 35283355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 43237202 - 43237170
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||| ||||||||||||||||||    
T  43237202 ccctcccctccaaactcccaaacaaagccttag 43237170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 44412006 - 44411970
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  44412006 ccctcccttcccctccaaactcccaaacaaagcctta 44411970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 263
Target Start/End: Original strand, 44412320 - 44412356
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaag 263  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  44412320 caaaacccttccctcccctccaaactcccaaacaaag 44412356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 268
Target Start/End: Original strand, 49861065 - 49861101
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcctta 268  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  49861065 ccctcccttcccctccaaactcccaaacaaagcctta 49861101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 55439495 - 55439463
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||| ||||||||||||||||||    
T  55439495 ccctcccctccaaactcccaaacaaagccttag 55439463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 237 - 269
Target Start/End: Complemental strand, 55445006 - 55444974
Alignment:
Q  237 ccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||||||||||| ||||||||||||||||||    
T  55445006 ccctcccctccaaactcccaaacaaagccttag 55444974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 156
Target Start/End: Complemental strand, 2001 - 1913
Alignment:
Q  66 gggcactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaattttcaa 156  Q
    ||||| |||||||||||| || ||  ||||||| |||||||||||| |||| ||||||| ||| | ||||||||||||||| |||||||||    
T  2001 gggcattctttaaacattttaaaa--agaaattttttcataaaaaaattaaatatttcattttccgatgcattgattacattaattttcaa 1913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 69 - 149
Target Start/End: Complemental strand, 18220 - 18140
Alignment:
Q  69 cactctttaaacattctacaagaagaaattatttcataaaaaatttaagtatttcaattttcaatgcattgattacataaa 149  Q
    ||||||||||  || ||| ||||||||||||| |||||||||| | || ||||||||||  | || |||||||||||||||    
T  18220 cactctttaaggatgctaaaagaagaaattatgtcataaaaaagtcaaatatttcaattcccgatacattgattacataaa 18140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0245 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0245
Description:

Target: scaffold0245; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 4067 - 4028
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  4067 caaaactctcccctcccctccaaactcccaaacaaagcct 4028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0229 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0229
Description:

Target: scaffold0229; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 227 - 266
Target Start/End: Complemental strand, 4398 - 4359
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagcct 266  Q
    |||||| ||||||||||||||||| |||||||||||||||    
T  4398 caaaactctcccctcccctccaaactcccaaacaaagcct 4359  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 269
Target Start/End: Original strand, 82930 - 82972
Alignment:
Q  227 caaaaccctcccctcccctccaaattcccaaacaaagccttag 269  Q
    |||||| ||||||||||||||||||||||||||| | ||||||    
T  82930 caaaacactcccctcccctccaaattcccaaacagacccttag 82972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 232 - 266
Target Start/End: Complemental strand, 59706 - 59672
Alignment:
Q  232 ccctcccctcccctccaaattcccaaacaaagcct 266  Q
    ||||||||||||||||||| |||||||||||||||    
T  59706 ccctcccctcccctccaaactcccaaacaaagcct 59672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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