View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1570_low_6 (Length: 342)
Name: NF1570_low_6
Description: NF1570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1570_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 11 - 334
Target Start/End: Complemental strand, 4410924 - 4410601
Alignment:
| Q |
11 |
tagttcatctcatcaagattttcaaatgaaaatgttgcaatttgaacaagtatttcctgaattacagcaaggtatcttgatcctaatattgcaggcgaaa |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4410924 |
tagtttatctcatcaagattttcaaatgaaaatgttgcaatttgaacaagtatttcctgaattacagcaaggtatcttgatcctaatattgcgggcgaaa |
4410825 |
T |
|
| Q |
111 |
acttgacatgtttatcattccctaaactcatagaaagttccatactactacatgaggcttgttccaaacctgatcttgttccattcatgctatgagttaa |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4410824 |
acttgacatgtttatcattccctaaactcatagaaagttccatactactacatgaggcttgttccaaacctgatcttgttccattcatgctatgagttaa |
4410725 |
T |
|
| Q |
211 |
gtctgaacaactaatctctgagcattgacctgaagttggagatgttgcaagacttagtgaaagctcattgctacaattcgaggaactataagcgagattc |
310 |
Q |
| |
|
||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4410724 |
gtcagaacaactaatctctgagcattgaactgaagttggagatgttgcaagacttagtgaaagctcattgctacaattcgaggaactataagcgagattc |
4410625 |
T |
|
| Q |
311 |
gttaagttagcaacatttgatgat |
334 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
4410624 |
gttaagttagcaacatttgatgat |
4410601 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University