View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15710_low_1 (Length: 681)
Name: NF15710_low_1
Description: NF15710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15710_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 578; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 15 - 665
Target Start/End: Complemental strand, 50398348 - 50397706
Alignment:
| Q |
15 |
cagagacgataactaactttaaattataaaaaaggaaacttgtgattgaagaaaactcaacatacatgacttgctaacatgtaaagtaaaagattgtaag |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50398348 |
cagagacgataactaactttaaattataaaaaaggaaacttgtgattgaagaaaactcaacatacatgacttgctaacatgtaaagtaaaagattgtaag |
50398249 |
T |
|
| Q |
115 |
cagctccggcccaagccgtctttgtgacaacaccagtagctttaactatctgagaacttaatggaaaaatcatatacaatctagggacatattgaagcag |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
50398248 |
cagctccggcccaagccgtctttgtgacaacaccagtagctttaactatctgagaacttaatggaaaaatcatatacaatctggggacatattgaagcag |
50398149 |
T |
|
| Q |
215 |
gacaatcagtacaagagcattgttggtatgatcatcatgggagcttctaattgctggcataataaaccaaatcacaatctgccaacaaagaaaagaaagc |
314 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
50398148 |
gacaatcagtacaagagcattgttggtatgatcatcatgggagcttctaattgctggcataataaaccaaatcacaatctgccaacaaagaaaagcaagc |
50398049 |
T |
|
| Q |
315 |
gtt-acaatatcatataacatctctttaagggacaaaatataaagaccatacaaaaccaagcaaataggctcaaaaaatgtgtatgaattgcttgttgca |
413 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
50398048 |
gttaacaatatcatataacatctctttaagggacaaaatataaagaccatacaaaaccaagcaaatagactcaaaaaatgtgtatgaattgcttgttgca |
50397949 |
T |
|
| Q |
414 |
taaagctctagcctaactgtcactcacattcaggtttatctgcatttctattgtgtttagtgtgtctattttatggcattcattgtatataatattcgtt |
513 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
50397948 |
taaagctctagcctaactgtcactcacattcaggtttatctgcatttctattgtgtttagtgtgtctattttatgacattcattg--tataatattcgtt |
50397851 |
T |
|
| Q |
514 |
tcaatttaaaatatcaacaaaaaataaaagcaaaagattttgattctgcagctggaatgaaactatcatcggaagtcgaaactaatgaattgtgcgcaaa |
613 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50397850 |
tcaatttaaaatatcaacaaaaaataaaagcaaaagattttg-----gtaact--aatgaaactatcatcggaagtcgaaactaatgaattgtgcgcaaa |
50397758 |
T |
|
| Q |
614 |
tttctaactattgcattcatttgttttttatttataatttgtaaccattgat |
665 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50397757 |
tttctaactattgcattcatttgttttttatttataatttgtaaccattgat |
50397706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 24975201 - 24975080
Alignment:
| Q |
114 |
gcagctccggcccaagccgtctttgtgacaacaccagtagctttaactatctgagaacttaatggaaaaatcatatacaatctagggacatattgaagca |
213 |
Q |
| |
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|||||||| |||||||| |||||||| || ||||| || ||||| | ||| ||||||||||| |||||||||| ||| ||||| || | ||||||||||| |
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| T |
24975201 |
gcagctcctgcccaagcagtctttgtaactacaccggttgctttgattatttgagaacttaacggaaaaatcaaatataatcttggaagatattgaagca |
24975102 |
T |
|
| Q |
214 |
ggacaatcagtacaagagcatt |
235 |
Q |
| |
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|||||| | | |||||||||| |
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| T |
24975101 |
agacaatgaatgcaagagcatt |
24975080 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 77 - 127
Target Start/End: Complemental strand, 48464734 - 48464684
Alignment:
| Q |
77 |
tacatgacttgctaacatgtaaagtaaaagattgtaagcagctccggccca |
127 |
Q |
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|||||||||||||| |||||| || |||||||||||| ||||||| ||||| |
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| T |
48464734 |
tacatgacttgctagcatgtagaggaaaagattgtaaacagctccagccca |
48464684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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