View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15710_low_2 (Length: 405)
Name: NF15710_low_2
Description: NF15710
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15710_low_2 |
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| [»] scaffold0254 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 369; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 9 - 393
Target Start/End: Complemental strand, 2126151 - 2125767
Alignment:
| Q |
9 |
gaaatgaaaatcaaatttatcaatgtcatgttcatatcataataattgtactcctaaatttccactagcaaaatatgcttccataacaataccatttaat |
108 |
Q |
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| T |
2126151 |
gaaatgaaaatcaaatttatcaatgtcatgttgatatcataataattgtactcctaaatttccactagcaaaatatgcttccataacaataccatttaat |
2126052 |
T |
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| Q |
109 |
ttcaatataaattcaaaattcttggaccacaaggatcatattacctagacaacacaaaaagtgttgaacttgtaataattgattaacaacatattagtaa |
208 |
Q |
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| T |
2126051 |
ttcaatataaattcaaaattcttggaccacaaggatcatattacatagacaacacaaaaagtgttgaacttgtaataattgattaacaacatattagtaa |
2125952 |
T |
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| Q |
209 |
cttaagcatgattactattacataagcttagaaaccattacatataggtgcatatgtatgtatctatggacacttaggtctattgccatgagtcaccata |
308 |
Q |
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| T |
2125951 |
cttaagcatgattactattacacaagcttagaaaccattacatataggtgcatatgtatgtatctatggacacttaggtctattgccatgagtcaccata |
2125852 |
T |
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| Q |
309 |
tcagtgtaacacttgccacatttttctctattaccataagttcctggagggacacatttgcaccggtcacaacaagtcatgcatg |
393 |
Q |
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| T |
2125851 |
tcagtgtaacacttgccacatttttctctattaccataagttcctggaggaacacatttgcaccggtcacaacaagtcatgcatg |
2125767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 202
Target Start/End: Original strand, 2244660 - 2244854
Alignment:
| Q |
10 |
aaatgaaaatcaaatttatcaatgtcatgttcatatcataataattgtactcctaaatttccactagcaaaatatgcttccataacaataccatttaatt |
109 |
Q |
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| T |
2244660 |
aaatgagaatcaaatttatcaaggtcatgttcatatcatattaattgcactcctgaattttccatagcaaaatatacttccatgataataccatttaatt |
2244759 |
T |
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| Q |
110 |
tca--atataaattcaaaattcttggaccacaaggatcatattacctagacaacacaaaaagtgttgaacttgtaataattgattaacaacatat |
202 |
Q |
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| T |
2244760 |
tcagtatataaattcaaaaattttggaccacaaggatcatattacatagacaacccaaactttgttgaacttgtaataattgattaacaacatat |
2244854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 265 - 393
Target Start/End: Original strand, 2244854 - 2244982
Alignment:
| Q |
265 |
tatgtatctatggacacttaggtctattgccatgagtcaccatatcagtgtaacacttgccacatttttctctattaccataagttcctggagggacaca |
364 |
Q |
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| T |
2244854 |
tatgtatttatggacacttaggtctattgccatgagtcaacatatcagtgtagcacttgccacatttttctttgctacaataagttcttagagggacaca |
2244953 |
T |
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| Q |
365 |
tttgcaccggtcacaacaagtcatgcatg |
393 |
Q |
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| T |
2244954 |
tttgcaccggtcacgacatgccatgcatg |
2244982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 305 - 392
Target Start/End: Complemental strand, 2147067 - 2146980
Alignment:
| Q |
305 |
catatcagtgtaacacttgccacatttttctctattaccataagttcctggagggacacatttgcaccggtcacaacaagtcatgcat |
392 |
Q |
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| T |
2147067 |
catatcagtgtagcacttgccacatttttctctgttaccataagttccaggagggacacattgacagcgatcacaacatgtcatgcat |
2146980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0254 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0254
Description:
Target: scaffold0254; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 305 - 393
Target Start/End: Complemental strand, 23531 - 23440
Alignment:
| Q |
305 |
catatcagtgtaacacttgccacatttttctctattaccataagtt---cctggagggacacatttgcaccggtcacaacaagtcatgcatg |
393 |
Q |
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| T |
23531 |
catatcagtgtagcacttgccacatttttctctgttaccataagtttgatcaagagggacacatttgcagcgatcacaacatgtcatgcatg |
23440 |
T |
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