View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15711_high_1 (Length: 525)

Name: NF15711_high_1
Description: NF15711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15711_high_1
NF15711_high_1
[»] chr7 (4 HSPs)
chr7 (330-515)||(42784259-42784444)
chr7 (330-515)||(48479481-48479666)
chr7 (159-240)||(42784086-42784167)
chr7 (158-235)||(48479731-48479808)
[»] chr4 (6 HSPs)
chr4 (330-515)||(2893512-2893697)
chr4 (330-515)||(5594929-5595114)
chr4 (330-515)||(5601122-5601307)
chr4 (158-240)||(5595205-5595287)
chr4 (158-240)||(5601398-5601480)
chr4 (158-240)||(2893337-2893419)


Alignment Details
Target: chr7 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 330 - 515
Target Start/End: Original strand, 42784259 - 42784444
Alignment:
Q  330 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtagacataagtttatagaggtgg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  42784259 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtacacataagtttctagaggtgg 42784358  T
Q  430 tttaagcaagaaacacacttcaaaacttttcattcccttcttaattcctcaaaacagccccctccttcaactttccaattcttcat 515  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  42784359 tttaagcaagaaaaacacttcaaaacttttcactcccttcttaattcctcaaaaccgccccctccttcaactttccaattcttcat 42784444  T

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Target: chr7; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 330 - 515
Target Start/End: Complemental strand, 48479666 - 48479481
Alignment:
Q  330 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtagacataagtttatagaggtgg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  48479666 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtacacataagtttctagaggtgg 48479567  T
Q  430 tttaagcaagaaacacacttcaaaacttttcattcccttcttaattcctcaaaacagccccctccttcaactttccaattcttcat 515  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48479566 tttaagcaagaaaaacacttcaaaacttttcactcccttcttaattcctcaaaaccgccccctccttcaactttccaattcttcat 48479481  T

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Target: chr7; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 159 - 240
Target Start/End: Original strand, 42784086 - 42784167
Alignment:
Q  159 aggaattaaagggttacaaattaacaaaggataattatgtcttttcctttgaagggtaaaatggtaaacttgctaatcaaga 240  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  42784086 aggaattaaagggttacaaattaacaaaggataattgtgtcttttcccttgaagggcaaaatggtaaacttgctaatcaaga 42784167  T

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Target: chr7; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 158 - 235
Target Start/End: Complemental strand, 48479808 - 48479731
Alignment:
Q  158 gaggaattaaagggttacaaattaacaaaggataattatgtcttttcctttgaagggtaaaatggtaaacttgctaat 235  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||    
T  48479808 gaggaattaaagggttacaaattaacaaaggataattgtgtcttttcccttgaagggcaaaatggtaaacttgctaat 48479731  T

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Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 330 - 515
Target Start/End: Original strand, 2893512 - 2893697
Alignment:
Q  330 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtagacataagtttatagaggtgg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  2893512 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtacacataagtttctagaggtgg 2893611  T
Q  430 tttaagcaagaaacacacttcaaaacttttcattcccttcttaattcctcaaaacagccccctccttcaactttccaattcttcat 515  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  2893612 tttaagcaagaaaaacacttcaaaacttttcactcccttcttaattcctcaaaaccgccccctccttcaactttccaattcttcat 2893697  T

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Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 330 - 515
Target Start/End: Complemental strand, 5595114 - 5594929
Alignment:
Q  330 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtagacataagtttatagaggtgg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  5595114 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtacacataagtttctagaggtgg 5595015  T
Q  430 tttaagcaagaaacacacttcaaaacttttcattcccttcttaattcctcaaaacagccccctccttcaactttccaattcttcat 515  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5595014 tttaagcaagaaaaacacttcaaaacttttcactcccttcttaattcctcaaaaccgccccctccttcaactttccaattcttcat 5594929  T

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Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 330 - 515
Target Start/End: Complemental strand, 5601307 - 5601122
Alignment:
Q  330 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtagacataagtttatagaggtgg 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||    
T  5601307 aagaattcggttccctccctatactatcttaaccaccaaaacttcatcaaattaccatgcattcactacatgaatggtacacataagtttctagaggtgg 5601208  T
Q  430 tttaagcaagaaacacacttcaaaacttttcattcccttcttaattcctcaaaacagccccctccttcaactttccaattcttcat 515  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5601207 tttaagcaagaaaaacacttcaaaacttttcactcccttcttaattcctcaaaaccgccccctccttcaactttccaattcttcat 5601122  T

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Target: chr4; HSP #4
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 5595287 - 5595205
Alignment:
Q  158 gaggaattaaagggttacaaattaacaaaggataattatgtcttttcctttgaagggtaaaatggtaaacttgctaatcaaga 240  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  5595287 gaggaattaaagggttacaaattaacaaaggataattgtgtcttttcccttgaagggcaaaatggtaaacttgctaatcaaga 5595205  T

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Target: chr4; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 158 - 240
Target Start/End: Complemental strand, 5601480 - 5601398
Alignment:
Q  158 gaggaattaaagggttacaaattaacaaaggataattatgtcttttcctttgaagggtaaaatggtaaacttgctaatcaaga 240  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  5601480 gaggaattaaagggttacaaattaacaaaggataattgtgtcttttcccttgaagggcaaaatggtaaacttgctaatcaaga 5601398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 2893337 - 2893419
Alignment:
Q  158 gaggaattaaagggttacaaattaacaaaggataattatgtcttttcctttgaagggtaaaatggtaaacttgctaatcaaga 240  Q
    |||||||||||| |||||||||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||    
T  2893337 gaggaattaaagagttacaaattaacaaaggataattgtgtcttttcccttgaagggcaaaatggtaaacttgctaatcaaga 2893419  T

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