View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15711_high_3 (Length: 408)
Name: NF15711_high_3
Description: NF15711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15711_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 28256709 - 28256321
Alignment:
| Q |
1 |
atgaatcttgttgcacatttaatatccctttgcatattcgtgcatatattaataggcccctctttgtatggtatagtatagtaccccctacatttgctag |
100 |
Q |
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| T |
28256709 |
atgaatcttgttgcacatttaatatccctttgcatattcgtgcatatattaataggcccctctttgtatggtatagtatagtaccccctacatttgctag |
28256610 |
T |
|
| Q |
101 |
ctagcttacattttttctctactaatgaaaattgattttatgctacacttgagtttgtagttcctaaaaatatgagcacttactctcttagagcccacaa |
200 |
Q |
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| T |
28256609 |
ctagcttacattttttctctactaatgaaaattgattttatgctacacttgagtttgtagttcctacaaatatgagcacttactctcttagagcccacaa |
28256510 |
T |
|
| Q |
201 |
atcttttctagttgttattttcttcacggtattttctattggttggtgccttagagtgatcccaaatcatggtacgtgacatgttttacattttacattt |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
28256509 |
atctttcctagttgttattttcttcacggtattttctattggttggtgccttagagtgatcccaaatcatggtacgtgacatgttttacattttatattt |
28256410 |
T |
|
| Q |
301 |
tgccttccttaaccaatgatcgtgcctcggggacattggttaacatgaccttttacataattttgaaagtaacacatgaatatgatattgttttt |
395 |
Q |
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|| ||||||||||| || || |||||| | |||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||| |
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| T |
28256409 |
tggcttccttaaccgttg-----cccccgggga-accagttaacatgaccctttacgtaattttgaaagtaacacatgaatttgatattgttttt |
28256321 |
T |
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