View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15711_low_3 (Length: 424)
Name: NF15711_low_3
Description: NF15711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15711_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 19 - 411
Target Start/End: Complemental strand, 47386455 - 47386047
Alignment:
| Q |
19 |
tgtttcactattctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaa-----gtaacgataataactaccgacaagac |
113 |
Q |
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| T |
47386455 |
tgtttcactattctgctgctacatctgtatcgtatcactgcgctgctcgtgtgtccttcttggaacaaattaaagtaacgataataactaccgacaagac |
47386356 |
T |
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| Q |
114 |
tatagtttatgagacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaa---------tatttaaatcttgtatttt--attaat |
202 |
Q |
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| T |
47386355 |
tatagtttatgatacaaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaaggacaaaaatatttaaatcttgtattttttattaat |
47386256 |
T |
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| Q |
203 |
acatatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggcttcaccccaatttaaaaattctttgttttcatt |
302 |
Q |
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| T |
47386255 |
acatatataaatagaactgaaaatataaatagttttaggaagtagtagccactgccacccaaagggattcaccccaatttaaaaattctttgttttcatt |
47386156 |
T |
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| Q |
303 |
ttcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcttctagttccacc |
402 |
Q |
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| T |
47386155 |
ttcaccaccttctttgcaccttcttgcccactcatacttttccattcttgcgtcactacttttcatcttctcacatgcaacaacttcctctagttccacc |
47386056 |
T |
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| Q |
403 |
ttctctgct |
411 |
Q |
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| T |
47386055 |
ttctctgct |
47386047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 128 - 319
Target Start/End: Original strand, 47372630 - 47372820
Alignment:
| Q |
128 |
caaacacgggaaattcattaaacaaaacaagatgaatgcacgcacaaaaatattta-aatcttgtattttattaatacatatataaatagaactgaaaat |
226 |
Q |
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|||||||||||||||||||||||||| || | ||||||||| | ||| | || | |||||||| ||||||||||||| ||| |||||| |||||| |
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| T |
47372630 |
caaacacgggaaattcattaaacaaagcaggttgaatgcacaaaaaaacaaatacataatcttgttttttattaatacagata--aatagatgggaaaat |
47372727 |
T |
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| Q |
227 |
ataaatagttttaggaagtagtagccactgccacccaaag-----ggcttcaccccaatttaaaaattctttgttttcattttcaccaccttctttgc |
319 |
Q |
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| T |
47372728 |
ataaatagttttaggaagtagtagccac-----ccaaaagttcacgttctcaccccaatttaacgattcattgttttcattttcaccaccttctttgc |
47372820 |
T |
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