View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15711_low_5 (Length: 355)
Name: NF15711_low_5
Description: NF15711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15711_low_5 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 355
Target Start/End: Original strand, 45096729 - 45097083
Alignment:
| Q |
1 |
aaccaggtattccaagtgtatgaaaaagtaggtgtccgtaaaatatttttgtatttagagatgaagcaagacccaaaatacattgataagctaaaaaggt |
100 |
Q |
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| T |
45096729 |
aaccaggtattccaagtgtatgaaaaagtaggtgtccgtaaaatatttttgtatttagagatgaagcaagacccaaaatacattgataagctaaaaaggt |
45096828 |
T |
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| Q |
101 |
acaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgtaaattgcaaaacctaatctatttctaatataatcgtctctaatt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
45096829 |
acaatgaaaagaatgggatataagaccaaaccctcaaaaagagctaacaaaatcgtaaattgtaaaacctaatctatttctaatatagtcgtctctaatt |
45096928 |
T |
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| Q |
201 |
tggttaggcaactgagaccaccaagcataagaactcaaacttaaacgaagattagcaagctaatcagcacattgatttactgctctgtaaatgtgaatag |
300 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
45096929 |
tggttaggcaactgaaaccaccaagcataagaactcaaacttaaacgaagattagcaagctaatcagcacgttgatttactgctctgtaaatgtgaatag |
45097028 |
T |
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| Q |
301 |
aatgaaatagaaggacgtagaggaaatgaactagagacaattctctcatctgttc |
355 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
45097029 |
aatgaaatagaaggacgtagaggaaatgaaatagagacaattctctcatctgttc |
45097083 |
T |
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