View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15711_low_6 (Length: 325)

Name: NF15711_low_6
Description: NF15711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15711_low_6
NF15711_low_6
[»] chr3 (4 HSPs)
chr3 (11-308)||(3888331-3888630)
chr3 (256-300)||(13806146-13806190)
chr3 (217-294)||(2315456-2315533)
chr3 (217-294)||(47364804-47364881)
[»] scaffold0137 (1 HSPs)
scaffold0137 (11-308)||(2674-2973)
[»] chr7 (3 HSPs)
chr7 (222-294)||(5015145-5015217)
chr7 (256-300)||(29906635-29906679)
chr7 (255-300)||(28773880-28773925)
[»] chr5 (2 HSPs)
chr5 (222-295)||(43537566-43537639)
chr5 (256-300)||(12498254-12498298)
[»] chr4 (1 HSPs)
chr4 (256-300)||(52906423-52906467)
[»] chr8 (1 HSPs)
chr8 (218-295)||(35514549-35514626)
[»] chr6 (1 HSPs)
chr6 (256-292)||(35094132-35094168)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 3888331 - 3888630
Alignment:
Q  11 catcatcatgtattaactttctaaaaatattcagttttcaatttctaaaatctgtgtttataaattcctaagaagtatatggaagacaaatgtagtcaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888331 catcatcatgtattaactttctaaaaatattcagttttcaatttctaaaatctgtgtttataaattcctaagaagtatatggaagacaaatgtagtcaat 3888430  T
Q  111 aattgtgatagagacaagtgatcttatgcgttttaataaagtttcttaaaacactattttcatta--ctcttaaagaaataatgaaaatagtgttttgac 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  3888431 aattgtgatagagacaagtgatcttattcgttttaataaagtttcttaaaacactattttcattagtctcttaaagaaataatgaaaatagtgttttgac 3888530  T
Q  209 tactgaactattgtaaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaacagtaaactagatttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3888531 tactgaactattgtaaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaacagtaaactagatttt 3888630  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 13806146 - 13806190
Alignment:
Q  256 attctcttatgtttattagttgaggtgaaaatgaaaacagtaaac 300  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||    
T  13806146 attctcttatgtttattagttgaagtgaaaatgaaaacagaaaac 13806190  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 2315456 - 2315533
Alignment:
Q  217 tattgtaaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaaca 294  Q
    ||||||||| ||||| |||| | ||||| ||| || |  ||||||||||||||||||| ||| |||||||||||||||    
T  2315456 tattgtaaaagaaaacggtgggggaaatattggatctatattctcttatgtttattagatgaagtgaaaatgaaaaca 2315533  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 217 - 294
Target Start/End: Original strand, 47364804 - 47364881
Alignment:
Q  217 tattgtaaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaaca 294  Q
    |||||| || ||||||||||||  |||| || |||||   |||| ||||||||||||||||| |||||||||||||||    
T  47364804 tattgtgaaagaaaatggtgaggaaaatattaaatttattttcttttatgtttattagttgaagtgaaaatgaaaaca 47364881  T

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Target: scaffold0137 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: scaffold0137
Description:

Target: scaffold0137; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 11 - 308
Target Start/End: Original strand, 2674 - 2973
Alignment:
Q  11 catcatcatgtattaactttctaaaaatattcagttttcaatttctaaaatctgtgtttataaattcctaagaagtatatggaagacaaatgtagtcaat 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  2674 catcatcatgtattaactttctaaaaatattcagttttcaatttctaaaatctgtgtttataaattcctaagaagtatatggaagacaattgtagtcaat 2773  T
Q  111 aattgtgatagagacaagtgatcttatgcgttttaataaagtttcttaaaacactattttcatta--ctcttaaagaaataatgaaaatagtgttttgac 208  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||    
T  2774 aattgtgatagagacaagtgatcttattcgttttaataaagtttcttaaaacactattttcattagtctcttaaagaaataatgaaaatagtgttttgac 2873  T
Q  209 tactgaactattgtaaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaacagtaaactagatttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2874 tactgaactattgtaaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaacagtaaactagatttt 2973  T

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Target: chr7 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 222 - 294
Target Start/End: Complemental strand, 5015217 - 5015145
Alignment:
Q  222 taaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaaca 294  Q
    |||| ||||| |||||| ||||| ||| || | ||||||||||| |||||||||||| |||||||||||||||    
T  5015217 taaaagaaaaaggtgagggaaatattggatctacattctcttatttttattagttgaagtgaaaatgaaaaca 5015145  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 29906635 - 29906679
Alignment:
Q  256 attctcttatgtttattagttgaggtgaaaatgaaaacagtaaac 300  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||    
T  29906635 attctcttacgtttattagttgaagtgaaaatgaaaacagtaaac 29906679  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 300
Target Start/End: Original strand, 28773880 - 28773925
Alignment:
Q  255 cattctcttatgtttattagttgaggtgaaaatgaaaacagtaaac 300  Q
    ||||||||||||||||||| |||| || ||||||||||||| ||||    
T  28773880 cattctcttatgtttattatttgaagtaaaaatgaaaacaggaaac 28773925  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 43537639 - 43537566
Alignment:
Q  222 taaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaacag 295  Q
    |||| ||||||||||||  |||| || ||| |  |||||| |||||||||||||||| ||||||||||||||||    
T  43537639 taaaagaaaatggtgagaaaaatattaaatctatattctcctatgtttattagttgaagtgaaaatgaaaacag 43537566  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 12498254 - 12498298
Alignment:
Q  256 attctcttatgtttattagttgaggtgaaaatgaaaacagtaaac 300  Q
    ||||||||||||||||||||| | |||||||||||||||| ||||    
T  12498254 attctcttatgtttattagtttaagtgaaaatgaaaacagaaaac 12498298  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 300
Target Start/End: Original strand, 52906423 - 52906467
Alignment:
Q  256 attctcttatgtttattagttgaggtgaaaatgaaaacagtaaac 300  Q
    ||||||||||| ||||||||||| |||||||||||||||| ||||    
T  52906423 attctcttatgattattagttgaagtgaaaatgaaaacagaaaac 52906467  T

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Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 295
Target Start/End: Original strand, 35514549 - 35514626
Alignment:
Q  218 attgtaaacgaaaatggtgagcgaaatgttgaatttccattctcttatgtttattagttgaggtgaaaatgaaaacag 295  Q
    |||||||| |||||||||| |  |||||||| |  |  ||||||||||||||||||||||| ||| |||| |||||||    
T  35514549 attgtaaaagaaaatggtgtgaaaaatgttggacctatattctcttatgtttattagttgaagtggaaataaaaacag 35514626  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 292
Target Start/End: Original strand, 35094132 - 35094168
Alignment:
Q  256 attctcttatgtttattagttgaggtgaaaatgaaaa 292  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  35094132 attctctgatgtttattagttgaagtgaaaatgaaaa 35094168  T

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