View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15711_low_7 (Length: 259)

Name: NF15711_low_7
Description: NF15711
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15711_low_7
NF15711_low_7
[»] chr3 (9 HSPs)
chr3 (16-127)||(5004774-5004885)
chr3 (16-127)||(16975339-16975450)
chr3 (161-259)||(5004642-5004740)
chr3 (16-125)||(46404618-46404727)
chr3 (18-106)||(11967965-11968053)
chr3 (161-259)||(16975460-16975567)
chr3 (161-210)||(46404542-46404591)
chr3 (223-259)||(46404510-46404546)
chr3 (216-259)||(11937789-11937832)
[»] chr5 (6 HSPs)
chr5 (16-125)||(536899-537008)
chr5 (20-127)||(4558026-4558133)
chr5 (16-92)||(536815-536891)
chr5 (161-210)||(537036-537085)
chr5 (223-259)||(537081-537117)
chr5 (216-259)||(4557883-4557926)
[»] scaffold0413 (3 HSPs)
scaffold0413 (16-127)||(8925-9036)
scaffold0413 (161-210)||(9071-9120)
scaffold0413 (223-259)||(9116-9152)
[»] chr6 (10 HSPs)
chr6 (16-127)||(34636272-34636383)
chr6 (16-127)||(23260632-23260743)
chr6 (16-127)||(25005229-25005340)
chr6 (161-259)||(10751482-10751580)
chr6 (16-127)||(32450317-32450428)
chr6 (161-259)||(23260492-23260598)
chr6 (161-259)||(32450176-32450283)
chr6 (161-210)||(25005374-25005424)
chr6 (223-259)||(34636448-34636484)
chr6 (175-210)||(34636417-34636452)
[»] chr1 (7 HSPs)
chr1 (161-259)||(37667100-37667198)
chr1 (16-127)||(35762104-35762217)
chr1 (20-127)||(9537410-9537517)
chr1 (20-98)||(16074800-16074879)
chr1 (88-127)||(37667232-37667271)
chr1 (161-259)||(35761963-35762070)
chr1 (16-62)||(37667269-37667315)
[»] chr7 (8 HSPs)
chr7 (16-125)||(15873993-15874102)
chr7 (20-127)||(22077720-22077827)
chr7 (18-127)||(21491551-21491659)
chr7 (28-92)||(18367412-18367476)
chr7 (161-210)||(15873916-15873965)
chr7 (28-127)||(48576426-48576526)
chr7 (223-259)||(15873884-15873920)
chr7 (216-259)||(21491407-21491450)
[»] chr4 (3 HSPs)
chr4 (20-127)||(28969237-28969344)
chr4 (10-106)||(49499091-49499187)
chr4 (216-259)||(49499306-49499349)
[»] scaffold1838 (1 HSPs)
scaffold1838 (28-125)||(271-368)
[»] chr2 (1 HSPs)
chr2 (16-82)||(32735391-32735457)


Alignment Details
Target: chr3 (Bit Score: 100; Significance: 1e-49; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 5004885 - 5004774
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5004885 gaacaaaacaactaaaatatgaatttatatggtgaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 5004786  T
Q  116 atgtggaatgac 127  Q
    ||||||||||||    
T  5004785 atgtggaatgac 5004774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 16975339 - 16975450
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  16975339 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatttt 16975438  T
Q  116 atgtggaatgac 127  Q
    ||||||||||||    
T  16975439 atgtggaatgac 16975450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 5004740 - 5004642
Alignment:
Q  161 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttatgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  5004740 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgat 5004642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 46404727 - 46404618
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  46404727 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgtt 46404628  T
Q  116 atgtggaatg 125  Q
     |||||||||    
T  46404627 ttgtggaatg 46404618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 11968053 - 11967965
Alignment:
Q  18 acaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtat 106  Q
    |||||| | |||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||    
T  11968053 acaaaaaatctaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatacgatgtgtgtat 11967965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 161 - 259
Target Start/End: Original strand, 16975460 - 16975567
Alignment:
Q  161 gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatga--------agatacgagttttatgaaaatatttcagtttggtccatgtgg 251  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||        | ||| |||||||||||||||||||||||||||| |||||||    
T  16975460 gtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcatgtgg 16975559  T
Q  252 atgatgat 259  Q
    ||||||||    
T  16975560 atgatgat 16975567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 46404591 - 46404542
Alignment:
Q  161 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46404591 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa 46404542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 46404546 - 46404510
Alignment:
Q  223 atgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  46404546 atgaaaatatttcagtttggtccatgtggatgatgat 46404510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 11937832 - 11937789
Alignment:
Q  216 gagttttatgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    ||||||||||||||||||| | |||||| |||||||||||||||    
T  11937832 gagttttatgaaaatattttattttggttcatgtggatgatgat 11937789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 98; Significance: 2e-48; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 16 - 125
Target Start/End: Original strand, 536899 - 537008
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  536899 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 536998  T
Q  116 atgtggaatg 125  Q
    ||||||||||    
T  536999 atgtggaatg 537008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 4558133 - 4558026
Alignment:
Q  20 aaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgt 119  Q
    |||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||| |||| ||||| ||||||||| ||    
T  4558133 aaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaatcatattttatataatgtgtgtataataatgttacgt 4558034  T
Q  120 ggaatgac 127  Q
     |||||||    
T  4558033 agaatgac 4558026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 536815 - 536891
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatatttta 92  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  536815 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 536891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 537036 - 537085
Alignment:
Q  161 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  537036 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa 537085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 537081 - 537117
Alignment:
Q  223 atgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  537081 atgaaaatatttcagtttggtccatgtggatgatgat 537117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 4557926 - 4557883
Alignment:
Q  216 gagttttatgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  4557926 gagttttatgaaaatatttcattttggttcatgtggatgatgat 4557883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413 (Bit Score: 96; Significance: 4e-47; HSPs: 3)
Name: scaffold0413
Description:

Target: scaffold0413; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 8925 - 9036
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  8925 gaacaaaacaactaaaatatgaattcacatggtaaaatttaaccttttataacagttattagtttaattatattttatatgatgtctgtatgataatgtt 9024  T
Q  116 atgtggaatgac 127  Q
    ||||||||||||    
T  9025 atgtggaatgac 9036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 9071 - 9120
Alignment:
Q  161 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9071 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa 9120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0413; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 9116 - 9152
Alignment:
Q  223 atgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    ||||||||||||||| |||||||||||||||||||||    
T  9116 atgaaaatatttcagattggtccatgtggatgatgat 9152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 96; Significance: 4e-47; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 34636272 - 34636383
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34636272 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatgtt 34636371  T
Q  116 atgtggaatgac 127  Q
    |||||| |||||    
T  34636372 atgtggcatgac 34636383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 23260743 - 23260632
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||| ||||||||||||||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  23260743 gaacaaaacaactaaaatatgaattcatatggtaaaatttagccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgtt 23260644  T
Q  116 atgtggaatgac 127  Q
    ||||||||||||    
T  23260643 atgtggaatgac 23260632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 16 - 127
Target Start/End: Original strand, 25005229 - 25005340
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  25005229 gaacaaaacaactaaaataagaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtctgtatgataatttt 25005328  T
Q  116 atgtggaatgac 127  Q
    ||||||||||||    
T  25005329 atgtggaatgac 25005340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 10751580 - 10751482
Alignment:
Q  161 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttatgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||    
T  10751580 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatacgagttttacgaaaatatttcagtttggtccatgtggatgatgat 10751482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 32450428 - 32450317
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||| |||||||||| |||||| ||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  32450428 gaacaaaacaactaaaatatgaattcatatggtaaattttaactttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgtt 32450329  T
Q  116 atgtggaatgac 127  Q
    ||||||||||||    
T  32450328 atgtggaatgac 32450317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 23260598 - 23260492
Alignment:
Q  161 gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaagatac--------gagttttatgaaaatatttcagtttggtccatgtgg 251  Q
    |||||||||| |||||||||||||| ||||||||||||||||||||||||| |||         |||||||||||||||||||||||||||| |||||||    
T  23260598 gtggtattgttaaagaagtgttaga-tttgctgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcagtttggttcatgtgg 23260500  T
Q  252 atgatgat 259  Q
    ||||||||    
T  23260499 atgatgat 23260492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 32450283 - 32450176
Alignment:
Q  161 gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatga--------agatacgagttttatgaaaatatttcagtttggtccatgtgg 251  Q
    |||||||||| ||||||||||||||||||| |||||||||||||||||||        | ||| ||||||||||||||||||||| |||||| ||||||     
T  32450283 gtggtattgttaaagaagtgttagactttgttgataaactaaataaatgaaaatatagaaatatgagttttatgaaaatatttcattttggttcatgtgc 32450184  T
Q  252 atgatgat 259  Q
    ||||||||    
T  32450183 atgatgat 32450176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 25005374 - 25005424
Alignment:
Q  161 gtggtattgt-aaagaagtgttagactttgctgataaactaaataaatgaa 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  25005374 gtggtattgttaaagaagtgttagactttgctgataaactaaataaatgaa 25005424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Original strand, 34636448 - 34636484
Alignment:
Q  223 atgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  34636448 atgaaaatatttcagtttggtccatgtggatgatgat 34636484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 175 - 210
Target Start/End: Original strand, 34636417 - 34636452
Alignment:
Q  175 aagtgttagactttgctgataaactaaataaatgaa 210  Q
    ||||||||||||||||||||||||||||||||||||    
T  34636417 aagtgttagactttgctgataaactaaataaatgaa 34636452  T

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Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 37667198 - 37667100
Alignment:
Q  161 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaagatacgagttttatgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  37667198 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaaaatatgagttttatgaaaatatttcagtttggtccatgtggatgatgat 37667100  T

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Target: chr1; HSP #2
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 16 - 127
Target Start/End: Complemental strand, 35762217 - 35762104
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataaga--gttattagtttaattatattttatatgatgtctgtatgataatg 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||| |  ||||||||||||| ||||||||||||||||| ||||||||||||    
T  35762217 gaacaaaacaactaaaatatgaatttatatggtaaaatttaaccttttataaaaaagttattagtttaactatattttatatgatgtgtgtatgataatg 35762118  T
Q  114 ttatgtggaatgac 127  Q
    ||||||||||||||    
T  35762117 ttatgtggaatgac 35762104  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 9537517 - 9537410
Alignment:
Q  20 aaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgt 119  Q
    ||||||| |||||||| ||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9537517 aaaacaagtaaaatataaatttatattgtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtttgtatgataatgttatgt 9537418  T
Q  120 ggaatgac 127  Q
     |||||||    
T  9537417 agaatgac 9537410  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 98
Target Start/End: Original strand, 16074800 - 16074879
Alignment:
Q  20 aaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattag-tttaattatattttatatgat 98  Q
    ||||||| ||||||||||||| ||||| |||||||||| |||| |||| ||||||||| |||||||||||||||||||||    
T  16074800 aaaacaattaaaatatgaattcatatgttaaaatttaatcttttataaaagttattagatttaattatattttatatgat 16074879  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 37667271 - 37667232
Alignment:
Q  88 ttttatatgatgtctgtatgataatgttatgtggaatgac 127  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  37667271 ttttatatgatgtctgtatgataatgttatgtggaatgac 37667232  T

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Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 35762070 - 35761963
Alignment:
Q  161 gtggtattgtaaa-gaagtgttagactttgctgataaactaaataaatgaagatac--------gagttttatgaaaatatttcagtttggtccatgtgg 251  Q
    |||||||||| || ||||||||||||||||  ||||||||||||||||||| |||         | ||||||||||||||||||| |||||| |||||||    
T  35762070 gtggtattgttaatgaagtgttagactttgtagataaactaaataaatgaaaatatagaaatatgtgttttatgaaaatatttcattttggttcatgtgg 35761971  T
Q  252 atgatgat 259  Q
    ||||||||    
T  35761970 atgatgat 35761963  T

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Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 62
Target Start/End: Complemental strand, 37667315 - 37667269
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaaccttt 62  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||    
T  37667315 gaacaaaacaactaaaatatgaattcatatgataaaatttaaccttt 37667269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 16 - 125
Target Start/End: Complemental strand, 15874102 - 15873993
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgtt 115  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||    
T  15874102 gaacaaaacaactaaaatatgaattcatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatatctgtatgataatgtt 15874003  T
Q  116 atgtggaatg 125  Q
     |||||||||    
T  15874002 ttgtggaatg 15873993  T

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Target: chr7; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 127
Target Start/End: Original strand, 22077720 - 22077827
Alignment:
Q  20 aaaacaactaaaatatgaatttatatggtaaaatttaacc-tttcataagagttattagtttaattatattttatatgatgtctgtatgataatgttatg 118  Q
    |||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  22077720 aaaacaactaaaatataaatttatatggtaaaatttaaccatttca-aaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatg 22077818  T
Q  119 tggaatgac 127  Q
    | |||||||    
T  22077819 tagaatgac 22077827  T

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Target: chr7; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 18 - 127
Target Start/End: Complemental strand, 21491659 - 21491551
Alignment:
Q  18 acaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgttat 117  Q
    |||||| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| || || | ||||||||    
T  21491659 acaaaaaaactaaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgcat-aaaatgttat 21491561  T
Q  118 gtggaatgac 127  Q
    || |||||||    
T  21491560 gtagaatgac 21491551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 92
Target Start/End: Complemental strand, 18367476 - 18367412
Alignment:
Q  28 taaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatatttta 92  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||    
T  18367476 taaaatatgaatttatatggtaaaatttaaccttttataaaagttattagtttaattatatttta 18367412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 161 - 210
Target Start/End: Complemental strand, 15873965 - 15873916
Alignment:
Q  161 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15873965 gtggtattgtaaagaagtgttagactttgctgataaactaaataaatgaa 15873916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 28 - 127
Target Start/End: Original strand, 48576426 - 48576526
Alignment:
Q  28 taaaatatgaatttatatggtaaaatttaacctttcataagagttattag-tttaattatattttatatgatgtctgtatgataatgttatgtggaatga 126  Q
    ||||||||||||||||||||||||||||||  | | || | ||||||||| ||||||||||| ||||||||||| ||||||||||||| |||  ||||||    
T  48576426 taaaatatgaatttatatggtaaaatttaatatcttattaaagttattagttttaattatatattatatgatgtgtgtatgataatgtgatgcagaatga 48576525  T
Q  127 c 127  Q
    |    
T  48576526 c 48576526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 259
Target Start/End: Complemental strand, 15873920 - 15873884
Alignment:
Q  223 atgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    |||||||||||||||||||||||||||||||||||||    
T  15873920 atgaaaatatttcagtttggtccatgtggatgatgat 15873884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Complemental strand, 21491450 - 21491407
Alignment:
Q  216 gagttttatgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  21491450 gagttttatgaaaatatttcattttggttcatgtggatgatgat 21491407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 20 - 127
Target Start/End: Complemental strand, 28969344 - 28969237
Alignment:
Q  20 aaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgt 119  Q
    |||||||||||||||| |||||||||||||||||||||| ||| |||| ||||||||||||||||||||| |||||||||| ||||||||||| ||||||    
T  28969344 aaaacaactaaaatattaatttatatggtaaaatttaacattttataaaagttattagtttaattatattctatatgatgtgtgtatgataattttatgt 28969245  T
Q  120 ggaatgac 127  Q
     |||||||    
T  28969244 agaatgac 28969237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 10 - 106
Target Start/End: Original strand, 49499091 - 49499187
Alignment:
Q  10 tgagatgaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtat 106  Q
    ||||| ||| |||| ||||||||||||||||||||| |||||||||||||||| |||| | ||||||||||||||||||||||||| |||| |||||    
T  49499091 tgagaagaaaaaaaaaactaaaatatgaatttatatagtaaaatttaaccttttataaaaattattagtttaattatattttatataatgtgtgtat 49499187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 216 - 259
Target Start/End: Original strand, 49499306 - 49499349
Alignment:
Q  216 gagttttatgaaaatatttcagtttggtccatgtggatgatgat 259  Q
    ||||||||||||||||||||| |||||| |||||||||||||||    
T  49499306 gagttttatgaaaatatttcattttggttcatgtggatgatgat 49499349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1838 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold1838
Description:

Target: scaffold1838; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 28 - 125
Target Start/End: Original strand, 271 - 368
Alignment:
Q  28 taaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaattatattttatatgatgtctgtatgataatgttatgtggaatg 125  Q
    |||||||| ||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||    
T  271 taaaatataaatctatatggtaaaatttaaccttttataaaagttattagtttaattatattttatatgatgtgtgtatgataatgttatgtagaatg 368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 32735457 - 32735391
Alignment:
Q  16 gaacaaaacaactaaaatatgaatttatatggtaaaatttaacctttcataagagttattagtttaa 82  Q
    ||||||||||||||||||||| ||| ||||||| ||||||||||||| |||| || |||||||||||    
T  32735457 gaacaaaacaactaaaatatgcattcatatggtgaaatttaaccttttataaaagatattagtttaa 32735391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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