View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15712_high_12 (Length: 418)
Name: NF15712_high_12
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_high_12 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 406
Target Start/End: Complemental strand, 52033427 - 52033040
Alignment:
| Q |
18 |
ggaatatccaacaaacccatgaaataattgataaggtggcaaagaggtagcctggaaccacataccatgcaaagctgcacacaagtgcaatcaaaaagaa |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
52033427 |
ggaatatccaacaaacccatgaaataattgataaggtggcaaagaggtagcctggaaccacataccatgcaaagctgcacataagtgcaatcaaaaagaa |
52033328 |
T |
|
| Q |
118 |
cttactttttgacatgcgattctcatccttttcatgtaaagccctgccaaatattttag--atgtgttatatttcaataatgatacagtgatcatcatat |
215 |
Q |
| |
|
||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033327 |
cttcccttttgacatgcgattctcatccttttcatgtaaagtcctgccaaatattttagatatgtgttatatttcaataatgatacagtgatcatcatat |
52033228 |
T |
|
| Q |
216 |
aatgaatttaaacaacagtccaaaccaaattaacaacattaaggcatgtatttccttnnnnnnnnntaaataaataaacttaggtcctattttcaagaga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
52033227 |
aatgaatttaaacaacagtccaaaccaaattaacaacattaaggcatgtatttccttaaaaaaa---aaaaaaaaaaacttaggtcctattttcaagaga |
52033131 |
T |
|
| Q |
316 |
aataatataccagtagaaaatgatgcaccaattgat---atacttaattatatatttattatttttcaaatgcgtatattgtttatagaataat |
406 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
52033130 |
aata--ataccagtagaaaat-atgcaccaattgatataataattaattatatatttgttatttttcaaatgcgtatattgtttatagaataat |
52033040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 304 - 406
Target Start/End: Original strand, 8329134 - 8329241
Alignment:
| Q |
304 |
attttcaagagaaataatataccagtagaaaatgatgcaccaattgatatacttaattatata-------tttattatttttcaaatgcgtatattgttt |
396 |
Q |
| |
|
||||||||||||||| ||||| ||| |||||||| |||||||||||||||||||||||||| |||||| |||| ||||| |||||||| || |
|
|
| T |
8329134 |
attttcaagagaaatgatata--agtgaaaaatgatacaccaattgatatacttaattatataaaaatattttattcgttttaaaatgtgtatattgctt |
8329231 |
T |
|
| Q |
397 |
atagaataat |
406 |
Q |
| |
|
|||||||||| |
|
|
| T |
8329232 |
atagaataat |
8329241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University