View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_high_20 (Length: 327)
Name: NF15712_high_20
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_high_20 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 9 - 311
Target Start/End: Complemental strand, 38899708 - 38899406
Alignment:
| Q |
9 |
acatcatcaacaccagctgtagcttcgaaaattgcctggttggctgtaaaatgagcaaattttacatagggagagagttcttgaagtatctgaaacacac |
108 |
Q |
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| T |
38899708 |
acatcttcgacaccagctgtagcttcgaaaatcgcctggttggctgtaaaatgagcaaattttacatagggagagagttcttgaagtatctgaaacacac |
38899609 |
T |
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| Q |
109 |
agaatgtgcttgtctgtgtagaaacatgttctgaatggaacttaggagcatttgtagttttataatacaatcctcgagtaaagaaaagacacaacctgtt |
208 |
Q |
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| T |
38899608 |
agaatgtgcttgtctgtgtagaaacatgttctgaatggaacttaggagcatttgtagttttataatacaatccttgagtaaagaaaagacacaacctgtt |
38899509 |
T |
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| Q |
209 |
caataaactatcgccttttcctacagacgaggcattgtttagtttttcgattatgtcagaagcaagagtcatgttttgtgattcagcagcttcagctcct |
308 |
Q |
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| T |
38899508 |
caataaactatcgccttttcctacagacgaggcattgtttagtttttcgattatgtcagaagcaagagtcatgttttgtgattcagcagcttcagctcct |
38899409 |
T |
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| Q |
309 |
atc |
311 |
Q |
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| T |
38899408 |
atc |
38899406 |
T |
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