View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15712_high_27 (Length: 284)
Name: NF15712_high_27
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_high_27 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 271
Target Start/End: Original strand, 29663560 - 29663818
Alignment:
| Q |
13 |
aaatatcttatatctttatatcttgttggtattaatttaataattcgtcaatataagacatgttcaaataaatatataataggctatacaaatattagac |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29663560 |
aaatatcttatatctttatatcttgttggtattaatttaataattcgtcaatataagacatgttcaaataaatatataataggctatacaaatattagac |
29663659 |
T |
|
| Q |
113 |
gtatttagatggatgaaccattgatgatagatagnnnnnnnggtggtactcttgaaaaatagagacggatgacgattgtgcatgttcacgtaaaaaacaa |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29663660 |
gtatttagatggatgaaccattgatgatagatagtttttttggtggtactcttgaaaaatagagacggatgacgattgtgcatgttcacgtaaaaaacaa |
29663759 |
T |
|
| Q |
213 |
ggacaaattatataattaaaacccacgcactatattttatagcttaacgacttcatctc |
271 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29663760 |
ggacaaattatataattaaaacccacgcactatattttatagcttaacgacttcatctc |
29663818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University