View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15712_high_33 (Length: 256)
Name: NF15712_high_33
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_high_33 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 242; Significance: 1e-134; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 3948945 - 3948704
Alignment:
| Q |
1 |
agtttggtgttaggtcaaacacacgttagtagctatccaaaccacacctaagggattatatacttacttcttagtcaaaaattgttaacatgctttattc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948945 |
agtttggtgttaggtcaaacacacgttagtagctatccaaaccacacctaagggattatatacttacttcttagtcaaaaattgttaacatgctttattc |
3948846 |
T |
|
| Q |
101 |
atgtttatttttcttcccactaaaattttgctaaatggtcattaagagcatattaggcttacaacttgggcaaacaatatgcaaaagagagctttgtggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948845 |
atgtttatttttcttcccactaaaattttgctaaatggtcattaagagcatattaggcttacaacttgggcaaacaatatgcaaaagagagctttgtggt |
3948746 |
T |
|
| Q |
201 |
tgggagggggaactccagtaaaggcggcgaaccaggtttttg |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3948745 |
tgggagggggaactccagtaaaggcggcgaaccaggtttttg |
3948704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University