View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_high_42 (Length: 223)
Name: NF15712_high_42
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_high_42 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 12 - 205
Target Start/End: Complemental strand, 49426632 - 49426439
Alignment:
| Q |
12 |
gtcgaagaaaattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagc |
111 |
Q |
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| T |
49426632 |
gtcgaagaaaattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagc |
49426533 |
T |
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| Q |
112 |
ttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttatt |
205 |
Q |
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| T |
49426532 |
ttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagaactcaaaacatatagagagttatt |
49426439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 97 - 181
Target Start/End: Complemental strand, 49432788 - 49432704
Alignment:
| Q |
97 |
gccaagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaaga |
181 |
Q |
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| T |
49432788 |
gccaagaaagtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatccattgtggtaaaga |
49432704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 16 - 205
Target Start/End: Complemental strand, 17641281 - 17641092
Alignment:
| Q |
16 |
aagaaaattgggaggacccaatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttct |
115 |
Q |
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| T |
17641281 |
aagaaaattgggtggacccaatatttgttccgcaatgtttttcattacaccttaaaatttgcaaagttctaaacttcataggccaagaaggcgagcttct |
17641182 |
T |
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| Q |
116 |
attggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagttatt |
205 |
Q |
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| T |
17641181 |
attggcaagaaacattctgaagaatgcaaaagttttgcaaaccatgaaaatacattgcagtgaagacctcaaaatagaaagagagttatt |
17641092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 9 - 166
Target Start/End: Original strand, 49415938 - 49416098
Alignment:
| Q |
9 |
gatgtcgaagaaaattgggaggacc---caatatctgttcctcattgtctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaa |
105 |
Q |
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| T |
49415938 |
gatgtccatgaaaattgggaggaccacccaatatttgttccacaaagtctttcattacaacttaaaacttgcaaacttctgaacttcttaggcgaagaag |
49416037 |
T |
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| Q |
106 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaat |
166 |
Q |
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| T |
49416038 |
gcgagcttctattggcaagatacattttgaagaatgctagagttttgcaaaccatgaaaat |
49416098 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 49445393 - 49445331
Alignment:
| Q |
106 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca |
168 |
Q |
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| T |
49445393 |
gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca |
49445331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 43362340 - 43362405
Alignment:
| Q |
106 |
gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattg |
172 |
Q |
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| T |
43362340 |
gtgagcttttattggcaatatatattgtgaagaatgcaagagttttgc-aaccatggaaatctattg |
43362405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 70; Significance: 1e-31; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 203
Target Start/End: Original strand, 1965543 - 1965692
Alignment:
| Q |
54 |
ctttcattaaaacttcaaacttgctcaattttgaaattcttgggccaagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgc |
153 |
Q |
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||||||||| ||||| |||||||| |||| | || ||||| |||||||||||||||||||| ||||||| | |||||||||||||| ||| |||||||| |
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| T |
1965543 |
ctttcattacaacttaaaacttgccaaattcttaatttctttggccaagaaagtgagcttcttttggcaagatatattctaaagaatacaaaagttttgc |
1965642 |
T |
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| Q |
154 |
aaaccatgaaaatcaattgtggtaaagagctcaaaacatatagagagtta |
203 |
Q |
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| T |
1965643 |
aaaccatgaaaatcgattgtggtgaagacttcaaaatattaagagagtta |
1965692 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 167
Target Start/End: Complemental strand, 41662563 - 41662531
Alignment:
| Q |
135 |
aagaatgcaagagttttgcaaaccatgaaaatc |
167 |
Q |
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| T |
41662563 |
aagaatgcaagagttttacaaaccatgaaaatc |
41662531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 99 - 203
Target Start/End: Complemental strand, 25457808 - 25457704
Alignment:
| Q |
99 |
caagaaagtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatcaattgtggtaaagagctcaaaacatatagag |
198 |
Q |
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||||||||||||| ||| ||||||| | |||||||||||||| ||| |||||||||||||||||||||| |||||||| |||| |||||| || |||| |
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| T |
25457808 |
caagaaagtgagcatcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatcgattgtggtgaagacttcaaaatattaagag |
25457709 |
T |
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| Q |
199 |
agtta |
203 |
Q |
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||||| |
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| T |
25457708 |
agtta |
25457704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Complemental strand, 986036 - 985984
Alignment:
| Q |
115 |
tattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatc |
167 |
Q |
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|||| |||| |||||||||||||||||||||| |||| ||||||||||||||| |
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| T |
986036 |
tattagcaagacatattctaaagaatgcaagaattttacaaaccatgaaaatc |
985984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 127 - 166
Target Start/End: Complemental strand, 996783 - 996744
Alignment:
| Q |
127 |
atattctaaagaatgcaagagttttgcaaaccatgaaaat |
166 |
Q |
| |
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|||||||||||||||||||| |||| |||||||||||||| |
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| T |
996783 |
atattctaaagaatgcaagacttttacaaaccatgaaaat |
996744 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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