View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_high_6 (Length: 469)
Name: NF15712_high_6
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 399; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 28 - 463
Target Start/End: Complemental strand, 47364856 - 47364421
Alignment:
| Q |
28 |
atgaattacatatttacaaatatcttcatgtgnnnnnnntagaaggtttcaacttagaatttggtttgcaaatagacatttaactgatttaagtaatggt |
127 |
Q |
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| T |
47364856 |
atgaattacaaatttacaaatatcttcatgtgaaaaaaatagaaggtttcaacttagaatttggtttgcaaatagacatttaactgatttaagtaatggt |
47364757 |
T |
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| Q |
128 |
taggtgcaaacttagacattagacttgtctgtaaatggaagaacaatttgctgaacttgacatagaaataatagctacttataggcaaaagtagtcattg |
227 |
Q |
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| T |
47364756 |
taggtgcaaacttagacattagacttgtctgtaaatggaagaacaatttgctgaacttgacatagaaataatagctacttataggcaaaagtagtcgttg |
47364657 |
T |
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| Q |
228 |
caaagaccaaaaacatgcacgttatgagaactttactcttaacagtaattttaatagtgcacacagttcaaagaattaaaataatgatgcatgtgatgta |
327 |
Q |
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| T |
47364656 |
caaagaccaaaaacatgcacgttatgagaactttactcttaacagtaattttaatagtgcacacagttcaaagaattaaaataatgatgcatgtgatgta |
47364557 |
T |
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| Q |
328 |
gattgagtgagatccaacatccaaaattgattacctatcctatccatcatatgaaatttccattaactctttaaaaaaggagaagattcatagttatgag |
427 |
Q |
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| T |
47364556 |
gattgagtgagaaccaacatccaaaattgattacctatcctatccatcatatgaaatttccataaactctttaaaaaaggagaagattcatagttatgag |
47364457 |
T |
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| Q |
428 |
acctaggtgctttgaaaaaagcatagtgatgatgtc |
463 |
Q |
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| T |
47364456 |
acctaggtgctttgaaaaaagcatagtgatgatgtc |
47364421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 3 - 35
Target Start/End: Complemental strand, 47474602 - 47474570
Alignment:
| Q |
3 |
aatatatatagtgacatactgggtgatgaatta |
35 |
Q |
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| T |
47474602 |
aatatatatagtgacatactgagtgatgaatta |
47474570 |
T |
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