View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_high_7 (Length: 463)
Name: NF15712_high_7
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 1241077 - 1241514
Alignment:
| Q |
1 |
actcttttggaagatgaattatcaatgtcaatggctgtgtccttggttgattctgttgaaggtttcatattgagttttttnnnnnnnnnnnttgtagaag |
100 |
Q |
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| T |
1241077 |
actcttttggaagatgaattatcaatgtcaatggttgtgtccttggttgattctgttgaaggtttcatattgagtttttttaaaaaaaaa-ttgtagaag |
1241175 |
T |
|
| Q |
101 |
atgttcaattcttgagactaaaattggttaatttttatgagacattaattatgggatgttttgagatgctatagaagtaagatggcaaatagttttttgg |
200 |
Q |
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| T |
1241176 |
atgttcaattcttgagactaaaataggttaatttttatgagacatta----tgggatgttttgagaggctatagaagtaagaaggaaaatagttttttgg |
1241271 |
T |
|
| Q |
201 |
gttgattttgttgttattattattattgtgagttttaggaaataaaactagtgattgagaagagacatagaaaaggcaggaacaccttgctttgtcttgt |
300 |
Q |
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| T |
1241272 |
gttgattttgttgttattattattattgtgagttttaggaaataaaactagtgattgagaagagacatagaaaaggtaggaacaccttgctttgtcttgt |
1241371 |
T |
|
| Q |
301 |
gagagttcacttttcagctgtattgttcagcttgaagttaagaataaagggaacatgagatcattgttggtgatatggtatggacatataaaggttcatg |
400 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1241372 |
gagagttcacttttaagctgtattgttcagcttgaagttaagaataaagggaacatgagatcattgttggtga-----tatggacatataaaggttcatg |
1241466 |
T |
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| Q |
401 |
ttgtctatttcatttgcatgtcactattgaaatagatagtcaagatga |
448 |
Q |
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| T |
1241467 |
ttgtctatttcatttgcatgtcactattgaaatagatagtcaagatga |
1241514 |
T |
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