View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15712_low_10 (Length: 431)
Name: NF15712_low_10
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 44731856 - 44731458
Alignment:
| Q |
18 |
ctataaggatccacaagaaagggaggaacgtcacaagatattcacagcaaatgtgaattacattgaagttttcaacaatgatgccaataacaagctatac |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44731856 |
ctataaggatccacaagaaagggaggaacgtcacaagatattcacagcaaatgtgaattacattgaagttttcaacaatgatgccaataacaagctatac |
44731757 |
T |
|
| Q |
118 |
aagttaggcattaatcaatttgcagacctcaccaatgaagagttcatagcatctagaaacaaattcaagggtcatatgtgctcctcaatcgcgaaaacaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44731756 |
aagttaggcattaatcaatttgcagacctcaccaatgaagagttcatagcatctagaaacaaattcaagggtcatatgtgctcctcaatcgcgaaaacaa |
44731657 |
T |
|
| Q |
218 |
ctacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggtaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44731656 |
ctacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggtaa |
44731557 |
T |
|
| Q |
318 |
gtatcaatctaataagtaatgtactcaattctatatgtgataaaaaatttaattgccatttaactataattaatttttaatttacgtttttcgtaggat |
416 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44731556 |
gtatcaatctaataagtgatgtactcaattctatatgtgataaaaaatttaattgccatttaactataattaatttttaatttacgtttttcgtaggat |
44731458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 18 - 408
Target Start/End: Complemental strand, 30720418 - 30720029
Alignment:
| Q |
18 |
ctataaggatccacaagaaagggaggaacgtcacaagatattcacagcaaatgtgaattacattgaagttttcaacaatgatgccaataacaagctatac |
117 |
Q |
| |
|
||||||||||| |||||||| ||| | ||| |||||||||| || ||| || ||||||||||||| || |||||||| || |||||||||| ||||| |
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|
| T |
30720418 |
ctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaacgtaaattacattgaagcttccaacaatgctggcaataacaagttatac |
30720319 |
T |
|
| Q |
118 |
aagttaggcattaatcaatttgcagacctcaccaatgaagagttcatagcatctagaaacaaattcaagggtcatatgtgctcctcaatcgcgaaaacaa |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||| |
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|
| T |
30720318 |
aaattaggcattaatcaatttgcagacctcaccaacgaggagttcatagcatctagaaacaaattcaaaggtcatatgtgctcctcaatcacaaagacaa |
30720219 |
T |
|
| Q |
218 |
ctacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggtaa |
317 |
Q |
| |
|
|||||||||||||||||||| ||||| | || || |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
30720218 |
gtacttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggagaaagaaaggagcagtaacaccagtgaagaaccaaggtcaatgtggtaa |
30720122 |
T |
|
| Q |
318 |
gtatcaatctaataagtaatgtactcaattcta---tatgtgataaaaaatttaattgccatttaactataattaatttttaatttacgttttt |
408 |
Q |
| |
|
|| || ||||| || |||||| | |||||| | |||||||| ||| ||| ||||| |||| |||| || |||| ||||||||||| ||||| |
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|
| T |
30720121 |
gtgtctatctattatgtaatgcattcaattacaaactatgtgatcaaatattgaattgtcattaaactctagttaa-ttttaatttaccttttt |
30720029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 30880941 - 30881267
Alignment:
| Q |
18 |
ctataaggatccacaagaaagggaggaacgtcacaagatattcacagcaaatgtgaattacattgaagttttcaacaatgatgccaataacaagctatac |
117 |
Q |
| |
|
||||||||||| |||||||| ||| | ||| |||||||||| || ||| || ||||||||||||| || |||||||| || |||||||||| ||||| |
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|
| T |
30880941 |
ctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaacgtaaattacattgaagcttccaacaatgctggcaataacaagttatac |
30881040 |
T |
|
| Q |
118 |
aagttaggcattaatcaatttgcagacctcaccaatgaagagttcatagcatctagaaacaaattcaagggtcatatgtgctcctcaatcgcgaaaacaa |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||| |
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|
| T |
30881041 |
aaattaggcattaatcaatttgcagacctcaccaacgaggagttcatagcatctagaaacaaattcaaaggtcatatgtgctcctcaatcacaaagacaa |
30881140 |
T |
|
| Q |
218 |
ctacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggtaa |
317 |
Q |
| |
|
|||||||||||||||||||| ||||| | || || |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
30881141 |
gtacttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggagaaagaaaggagcagtaacaccagtgaagaaccaaggtcaatgtggtaa |
30881237 |
T |
|
| Q |
318 |
gtatcaatctaataagtaatgtactcaatt |
347 |
Q |
| |
|
|| || ||||| || |||||| | |||||| |
|
|
| T |
30881238 |
gtgtctatctattatgtaatgcattcaatt |
30881267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 18 - 408
Target Start/End: Original strand, 30892024 - 30892413
Alignment:
| Q |
18 |
ctataaggatccacaagaaagggaggaacgtcacaagatattcacagcaaatgtgaattacattgaagttttcaacaatgatgccaataacaagctatac |
117 |
Q |
| |
|
||||||||||| |||||||| ||| | ||| |||||||||| || ||| || ||||||||||||| || |||||||| || |||||||||| ||||| |
|
|
| T |
30892024 |
ctataaggatcttcaagaaagagagaatcgtttaaagatattcaaagaaaacgtaaattacattgaagcttccaacaatgctggcaataacaagttatac |
30892123 |
T |
|
| Q |
118 |
aagttaggcattaatcaatttgcagacctcaccaatgaagagttcatagcatctagaaacaaattcaagggtcatatgtgctcctcaatcgcgaaaacaa |
217 |
Q |
| |
|
|| |||||||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| | || |||| |
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|
| T |
30892124 |
aaattaggcattaatcaatttgcagacatcaccaacgaggagttcatagcatctagaaacaaattcaaaggtcatatgtgctcctcaatcacaaagacaa |
30892223 |
T |
|
| Q |
218 |
ctacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggtaa |
317 |
Q |
| |
|
|||||||||||||||||||| ||||| | || || |||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||| |
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|
| T |
30892224 |
gtacttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggagaaagaaaggagcagtaacaccagtgaagaaccaaggtcaatgtggtaa |
30892320 |
T |
|
| Q |
318 |
gtatcaatctaataagtaatgtactcaattcta---tatgtgataaaaaatttaattgccatttaactataattaatttttaatttacgttttt |
408 |
Q |
| |
|
|| || ||||| || |||||| | |||||| | |||||||| ||| ||| ||||| |||| |||| || |||| ||||||||||| ||||| |
|
|
| T |
30892321 |
gtgtctatctattatgtaatgcattcaattacaaactatgtgatcaaatattgaattgtcattaaactctagttaa-ttttaatttaccttttt |
30892413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 19 - 316
Target Start/End: Complemental strand, 16868229 - 16867932
Alignment:
| Q |
19 |
tataaggatccacaagaaagggaggaacgtcacaagatattcacagcaaatgtgaattacattgaagttttcaacaatgatgccaataacaagctataca |
118 |
Q |
| |
|
||||||||| | |||||||||||| ||||| |||||||||||| | |||||||||||||||||||| ||||||||| | || ||||||||||||||||| |
|
|
| T |
16868229 |
tataaggattctcaagaaagggagaaacgtttcaagatattcactgaaaatgtgaattacattgaagctttcaacaaaggtgacaataacaagctataca |
16868130 |
T |
|
| Q |
119 |
agttaggcattaatcaatttgcagacctcaccaatgaagagttcatagcatctagaaacaaattcaagggtcatatgtgctcctcaatcgcgaaaacaac |
218 |
Q |
| |
|
||||| ||||||||||||| ||||||||||| || ||||||| | | ||||||||||| |||||||| ||||||||||| |||||| | | |||| |
|
|
| T |
16868129 |
cactaggcgttaatcaatttgccgacctcaccaacgacgagttcacatcgtctagaaacaagttcaaggggcatatgtgctcttcaatcacaaggacaag |
16868030 |
T |
|
| Q |
219 |
tacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggta |
316 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||| | |||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
16868029 |
tacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggaggaagaaaggagcagttacacctgtgaagaaccaaggacaatgtggta |
16867932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 165; Significance: 4e-88; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 18 - 338
Target Start/End: Original strand, 8898559 - 8898879
Alignment:
| Q |
18 |
ctataaggatccacaagaaagggaggaacgtcacaagatattcacagcaaatgtgaattacattgaagttttcaacaatgatgccaataacaagctatac |
117 |
Q |
| |
|
||||||||||| |||||||||||| | ||| |||||||||||||| ||| |||| |||||||||| |||||| |||| || ||||||| | |||| |
|
|
| T |
8898559 |
ctataaggatcatcaagaaagggagaagcgtttcaagatattcacagaaaacatgaaatacattgaagctttcaataatggtgacaataacgaatcatac |
8898658 |
T |
|
| Q |
118 |
aagttaggcattaatcaatttgcagacctcaccaatgaagagttcatagcatctagaaacaaattcaagggtcatatgtgctcctcaatcgcgaaaacaa |
217 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||| ||||||||||| |||||| | |||| |
|
|
| T |
8898659 |
aaactaggcattaatcaatttgcagacctcaccaatgaggagtttgtagcatctaggaacaaattcaagggacatatgtgctcatcaatcataaggacaa |
8898758 |
T |
|
| Q |
218 |
ctacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggtaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
8898759 |
ctacttttaagtatgaaaatgtaagtgcaatcccatctacagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggccaatgtggtac |
8898858 |
T |
|
| Q |
318 |
gtatcaatctaataagtaatg |
338 |
Q |
| |
|
|| || |||||| || ||||| |
|
|
| T |
8898859 |
gtttctatctaaaaactaatg |
8898879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 31726715 - 31726777
Alignment:
| Q |
257 |
cagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggtaagt |
319 |
Q |
| |
|
|||||||||||||| || |||||||||||||||||||||| || ||||| ||||||||||||| |
|
|
| T |
31726715 |
cagtggattggaggcaggaaggagcagtgacacctgtgaaaaatcaaggccaatgtggtaagt |
31726777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 31726522 - 31726564
Alignment:
| Q |
55 |
atattcacagcaaatgtgaattacattgaagttttcaacaatg |
97 |
Q |
| |
|
||||||| || |||||||||||||||||||| ||||||||||| |
|
|
| T |
31726522 |
atattcaaagaaaatgtgaattacattgaagctttcaacaatg |
31726564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 54277046 - 54277110
Alignment:
| Q |
257 |
cagtggattggaggaagaaaggagcagtgacacctgtgaagaaccaaggtcaatgtggtaagtat |
321 |
Q |
| |
|
|||| |||||||| |||||||| || || || || || ||||| ||||||||||||||||||||| |
|
|
| T |
54277046 |
cagttgattggagaaagaaaggtgctgtaaccccggtcaagaatcaaggtcaatgtggtaagtat |
54277110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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