View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_11 (Length: 420)
Name: NF15712_low_11
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_11 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 12 - 402
Target Start/End: Original strand, 37764427 - 37764817
Alignment:
| Q |
12 |
atgaatgttcctaagtcagattctgttgtagccatgcttctagatactggaaatcttgttttgaaaaataggcctaatgatgatgtattagattctctat |
111 |
Q |
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| T |
37764427 |
atgaatgttcctaagtcagattctgttgtagccatgcttctagatactggaaatcttgttttgaaaaataggcctaatgatgatgtattagattctctat |
37764526 |
T |
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| Q |
112 |
ggcagagttttgatcatccagcagatacatggcttcctggtggtaaaattaagttagacaataaaacaaagaagcctcagtatcttacttcatggaagaa |
211 |
Q |
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| T |
37764527 |
ggcagagttttgatcatccagcagatacatggcttcctggtggtaaaattaagttagacaataaaacaaagaagcctcagtatcttacttcatggaagaa |
37764626 |
T |
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| Q |
212 |
tagaaaagatcctgcaacaggtcttttctctttggaactagacccagaaggaacatcttcatatcttattctttggaataagtctcaacagtattggaca |
311 |
Q |
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| T |
37764627 |
tagaaaagatcctgcaacaggtcttttctctttggaactagacccagaaggaacatcttcatatcttattctttggaataagtctcaacagtattggaca |
37764726 |
T |
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| Q |
312 |
agtggatcttggaatggacatatttttagtttggttcctgagatgaggtcaaattatatcttcaatttttcgtttgtgtccaacgataatg |
402 |
Q |
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| T |
37764727 |
agtggatcttggaatggacatatttttagtttggttcctgagatgaggtcaaattatatcttcaatttttcgtttgtgtcgaatgataatg |
37764817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 402
Target Start/End: Complemental strand, 37801318 - 37800935
Alignment:
| Q |
19 |
ttcctaagtcagattctgttgtagccatgcttctagatactggaaatcttgttttgaaaaataggcctaatgatgatgtattagattctctatggcagag |
118 |
Q |
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| T |
37801318 |
ttcctaagtcagattctgttgtagctatgcttctagatactggaaatcttgttttaagacataggcctgatgatgatgtatcaaatcctctatggcagag |
37801219 |
T |
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| Q |
119 |
ttttgatcatccagcagatacatggcttcctggtggtaaaattaagttagacaataaaacaaagaagcctcagtatcttacttcatggaagaatagaaaa |
218 |
Q |
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| T |
37801218 |
ttttgatcatcctacagatacatttcttccgggtggaaaaattaagttggatgagaaaacaaagcagcctcagtatctcacttcatggaagaattggcaa |
37801119 |
T |
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| Q |
219 |
gatcctgcaacaggtcttttctctttggaactagacccagaaggaacatcttcatatcttattctttggaataagtctcaacagtattggacaagtggat |
318 |
Q |
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| T |
37801118 |
gatccttcaacgggtctattctctttggaactagaccctaaaggaacaaattcctatctcattcgttggaataagtctgaagaatattggacaagtggac |
37801019 |
T |
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| Q |
319 |
cttggaatggacatatttttagtttggttcctgagatgaggtcaaattatatcttcaatttttcgtttgtgtccaacgataatg |
402 |
Q |
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| T |
37801018 |
cttggaatggacaaaattttagtcttgttcctgagatgaggttaaattacatttacaatttttcatttgtgtcgaacgagaatg |
37800935 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 103; Significance: 4e-51; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 106 - 364
Target Start/End: Original strand, 14715 - 14973
Alignment:
| Q |
106 |
ctctatggcagagttttgatcatccagcagatacatggcttcctggtggtaaaattaagttagacaataaaacaaagaagcctcagtatcttacttcatg |
205 |
Q |
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|||| ||||||||||||||| |||| |||||||||||||||||||||| |||||||| | || ||| ||||||||||||||| ||||| ||| | || |
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| T |
14715 |
ctctttggcagagttttgattttccatcagatacatggcttcctggtggaaaaattaaacttgatcatataacaaagaagcctcaatatctcactgcttg |
14814 |
T |
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| Q |
206 |
gaagaatagaaaagatcctgcaacaggtcttttctctttggaactagacccagaaggaacatcttcatatcttattctttggaataagtctcaacagtat |
305 |
Q |
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| T |
14815 |
gaagaacagtgaagatccagcaacaggtttattctctcttgaactagaccctaatggaaccgattcatatttgattctttggaataaaactcaacagtat |
14914 |
T |
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| Q |
306 |
tggacaagtggatcttggaatggacatatttttagtttggttcctgagatgaggtcaaa |
364 |
Q |
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| T |
14915 |
tggacaagtggtccttggaatggacaaatattcagtttggttcctgaaatgaggtcaaa |
14973 |
T |
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