View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_12 (Length: 420)
Name: NF15712_low_12
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 16 - 414
Target Start/End: Complemental strand, 48172148 - 48171750
Alignment:
| Q |
16 |
atacttgtaactgctgagcaggcacaaccaatatttagagatcctaaaagatatggagatatggcagatccaaatctgaataaaaattatccagaaaagg |
115 |
Q |
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| T |
48172148 |
atacttgtaactgctgagcaggcacaaccaatatttagagatcctaaaagatatggagatatggcagatccaaatctgaataaaaattatccagaaaagg |
48172049 |
T |
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| Q |
116 |
atctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgtaactgctttgagttttctttc |
215 |
Q |
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| T |
48172048 |
atctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcgcgtcctttgatgagtgatgttgtaactgctttgagttttctttc |
48171949 |
T |
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| Q |
216 |
cacttctcctcctccagaagctgttcctgcacctcttccacctcccaattgtacctcccaaaagagtgttgccactgccgatgaaagggagagcgaagat |
315 |
Q |
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| T |
48171948 |
cacttctcctcctccagaagctgttcctgcacctcttccacctcccaattgtacctcccaaaagagtgttgccactgccgatgaaagtgagagcgaagat |
48171849 |
T |
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| Q |
316 |
gataatgacagccatagttctgatgaagagcgttttgttcatgaggataaaaagtctattacagcaactagcgcaaaacacaaagaatatgatgatgtc |
414 |
Q |
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| T |
48171848 |
gataatgacagccatagttccgatgaagagcgttctgttcatgaggataaaaagtctattacagcaactagcgcaaaacaccaagaatatgatgatgtc |
48171750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 72 - 218
Target Start/End: Original strand, 35288401 - 35288547
Alignment:
| Q |
72 |
agatatggcagatccaaatctgaataaaaattatccagaaaaggatctgaatcaagttgttgcaattgcagccatgtgcttacaagaggaatcagcagcg |
171 |
Q |
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|||||||||||||||| ||| || ||| | | |||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||| ||| ||| |
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| T |
35288401 |
agatatggcagatccacttctcaacaaacaattcccagaaaaggatcttaatcaagctgttgcaatagcagccatgtgcttacaagaggaaccagaagct |
35288500 |
T |
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| Q |
172 |
cgtcctttgatgagtgatgttgtaactgctttgagttttctttccac |
218 |
Q |
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| T |
35288501 |
cgtcctttgatcggcgacgttgtgaccgctctgagttttctttccac |
35288547 |
T |
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