View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_14 (Length: 418)
Name: NF15712_low_14
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 416
Target Start/End: Complemental strand, 31692029 - 31691614
Alignment:
| Q |
1 |
ctagtttcatttcaagttcctttgatatgtctatctcttccgtggcctcctttaacttttttcttgtgttttccaatttgaatgaaaactcatttgcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31692029 |
ctagtttcatttcaagttcctttgatatgtctatctcttccgtggcctcctttaacgtttttcttgtgttttccaatttgaatgaaaactcatttgcttc |
31691930 |
T |
|
| Q |
101 |
tctttctctttgaactctaatatcctccaactctttcaaagcctcaatcctggccaattcagcaagtacttgttcttcattggcttcttcaatctccttt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31691929 |
tctttctctttgaactctaatatcctccaactctttcaaagcctcaatcctggccaattcagcaagtacttgttcttcattggcttcttcaatctccttt |
31691830 |
T |
|
| Q |
201 |
ctaagtacttcttcnnnnnnngaacaatcaatcatctttgagcttgatgcttcgatttctttctcggcccgcgatttctcttgcaaaacagaagccacgt |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31691829 |
ctaagtacttcttctttttttgaacaatcaatcatctttgagcttgatgcttcgatttctttctcggcccgcgatttctcttgcaaaacagaagccacgt |
31691730 |
T |
|
| Q |
301 |
caagctttagcttaaacaattcctttttgagatattccaattctctcatcacttgtgcatactcataattctcattcctccttacaaccatagcaccatg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
31691729 |
caagctttagcttaaacaattcctttttgagatattccaattctctcatcacttgtgcatactcataattctcattcctccttacaaccataacaccatg |
31691630 |
T |
|
| Q |
401 |
ttgaccttttcccttc |
416 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
31691629 |
ttgaccttttcccttc |
31691614 |
T |
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