View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15712_low_16 (Length: 395)

Name: NF15712_low_16
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15712_low_16
NF15712_low_16
[»] chr7 (3 HSPs)
chr7 (121-395)||(44968754-44969029)
chr7 (1-49)||(44969101-44969149)
chr7 (271-354)||(35324087-35324170)
[»] chr5 (4 HSPs)
chr5 (238-394)||(28873639-28873799)
chr5 (238-394)||(28872199-28872354)
chr5 (246-354)||(3031398-3031507)
chr5 (265-334)||(2357748-2357817)
[»] chr6 (2 HSPs)
chr6 (246-354)||(369231-369339)
chr6 (246-350)||(367386-367490)
[»] chr2 (4 HSPs)
chr2 (246-354)||(4284993-4285102)
chr2 (246-354)||(5989346-5989454)
chr2 (246-354)||(5983391-5983499)
chr2 (246-293)||(1645027-1645075)
[»] chr8 (1 HSPs)
chr8 (276-354)||(14685292-14685370)
[»] scaffold0014 (1 HSPs)
scaffold0014 (288-391)||(34386-34488)
[»] chr3 (3 HSPs)
chr3 (246-354)||(12221719-12221827)
chr3 (246-302)||(11171991-11172047)
chr3 (292-354)||(27237247-27237309)
[»] chr4 (1 HSPs)
chr4 (246-305)||(53008170-53008229)


Alignment Details
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 121 - 395
Target Start/End: Complemental strand, 44969029 - 44968754
Alignment:
Q  121 ggtactataaaacaattaactgaagttataatttcattggatgaaaaatcaatgatatacaattannnnnnn-aaacaaccaaaatataaataacgagat 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||||||||||||||    
T  44969029 ggtactataaaacaattaactgaagttataatttcattggatgaaaaatcaatgatatacaattattttttttaaacaaccaaaatataaataacgagat 44968930  T
Q  220 ccaaattaaggtctttgatggattattaattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaa 319  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  44968929 ccaaattaaggtctttgatgaattattaattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaacttgcatgtgaagtaactaa 44968830  T
Q  320 ctcaagtttcttgcacgtaaagttatgagtttgttctagttgtttgttacatcgcttgatgtataaatacttcata 395  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  44968829 ctcaagtttcttgcacgtaaagttatgagtttgttctagttgtttgttacatcgtttgatgtataaatacttcata 44968754  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 44969149 - 44969101
Alignment:
Q  1 cattgatctcattctcatattaattattattgaccgatatgtctctaat 49  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  44969149 cattgatctcattctcatattaattattattgaccgatatgtctctaat 44969101  T

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Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 271 - 354
Target Start/End: Complemental strand, 35324170 - 35324087
Alignment:
Q  271 ttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttatgagtttgtt 354  Q
    ||||||||| ||||||||||||||||||| |||||  |||||||||||||||||||| |||||| || |||| || ||||||||    
T  35324170 ttatctttgattagtagtttgtttagaaacttgcacttgaagtaactaactcaagttacttgcatgtgaagtaataagtttgtt 35324087  T

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Target: chr5 (Bit Score: 116; Significance: 7e-59; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 238 - 394
Target Start/End: Complemental strand, 28873799 - 28873639
Alignment:
Q  238 tggattattaattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgt 337  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  28873799 tggattagtaattcattttagttagaattagtcttatctttgtttagcagtttgtttagaaacttgcatgtgaagtaactaactcaagttacttgcacgt 28873700  T
Q  338 aaagttatgagtttgttctagttgt----ttgttacatcgcttgatgtataaatacttcat 394  Q
     |||||||||||||||| |||||||    |||||||||| |||||||||||||||||||||    
T  28873699 gaagttatgagtttgttttagttgttttgttgttacatcacttgatgtataaatacttcat 28873639  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 238 - 394
Target Start/End: Complemental strand, 28872354 - 28872199
Alignment:
Q  238 tggattattaattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgt 337  Q
    ||||||| |||||||||||| |||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||| |||||||||    
T  28872354 tggattagtaattcattttatttagaattagtcttatctttgtttaacagtttgtttagaaacttgcatgtgaagtaactaactcaagttacttgcacgt 28872255  T
Q  338 aaagttatgagtttgttctagttg-tttgttacatcgcttgatgtataaatacttcat 394  Q
     |||||||||||||||| |||||| ||||||||||| |  ||||||||||||||||||    
T  28872254 gaagttatgagtttgttttagttgttttgttacatcac--gatgtataaatacttcat 28872199  T

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Target: chr5; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 3031398 - 3031507
Alignment:
Q  246 taattcatt-ttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagtta 344  Q
    ||||||||| ||||||||||||||| ||||||||| ||| ||||||||||||| | |||||||||||||||||||||   ||| ||||||||| ||||||    
T  3031398 taattcattattagttagaattagttttatctttgcttaatagtttgtttagatacttgcatgtgaagtaactaactattgttacttgcacgtgaagtta 3031497  T
Q  345 tgagtttgtt 354  Q
     |||||||||    
T  3031498 agagtttgtt 3031507  T

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Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 265 - 334
Target Start/End: Complemental strand, 2357817 - 2357748
Alignment:
Q  265 ttagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgca 334  Q
    ||||| ||||||||| |||||||||| |||||||| |||||  |||||||||||||||||||| ||||||    
T  2357817 ttagttttatctttgattagtagtttatttagaaacttgcacttgaagtaactaactcaagttacttgca 2357748  T

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Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 369339 - 369231
Alignment:
Q  246 taattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttat 345  Q
    |||||||||||||||||||||||| ||||||||| ||| |||| |||||||||| |||||||||||||||||||||   ||| ||||||||| ||||||     
T  369339 taattcattttagttagaattagttttatctttgcttaatagtctgtttagaaacttgcatgtgaagtaactaactattgttacttgcacgtgaagttaa 369240  T
Q  346 gagtttgtt 354  Q
    |||||||||    
T  369239 gagtttgtt 369231  T

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Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 246 - 350
Target Start/End: Complemental strand, 367490 - 367386
Alignment:
Q  246 taattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttat 345  Q
    |||||||||||||||||||||||| ||||||||| ||| ||||||||||||||| |||||||||||||||||||||   ||| ||||||||| ||| ||     
T  367490 taattcattttagttagaattagttttatctttgcttaatagtttgtttagaaacttgcatgtgaagtaactaactattgttacttgcacgtgaaggtaa 367391  T
Q  346 gagtt 350  Q
    |||||    
T  367390 gagtt 367386  T

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Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 4284993 - 4285102
Alignment:
Q  246 taattcatt-ttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagtta 344  Q
    ||||||||| || |||||||||||| ||||||||| ||| ||||||||||||| | |||||||||||||||||||||   ||| ||||||||| ||||||    
T  4284993 taattcattattggttagaattagttttatctttgcttaatagtttgtttagatacttgcatgtgaagtaactaactattgttacttgcacgtgaagtta 4285092  T
Q  345 tgagtttgtt 354  Q
     |||||||||    
T  4285093 agagtttgtt 4285102  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 5989346 - 5989454
Alignment:
Q  246 taattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttat 345  Q
    ||||||| |||||||||  ||||  ||||||||  ||||||||||||||||||| |||||  |||||||||||||||||||| |||||| || |||| ||    
T  5989346 taattcagtttagttagttttagctttatctttaattagtagtttgtttagaaacttgcacttgaagtaactaactcaagttacttgcatgtgaagtaat 5989445  T
Q  346 gagtttgtt 354  Q
     ||||||||    
T  5989446 aagtttgtt 5989454  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 246 - 354
Target Start/End: Original strand, 5983391 - 5983499
Alignment:
Q  246 taattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttat 345  Q
    ||||||| |||||||||  ||||  |||| |||| ||||||||||||||||||| |||||  |||||||||||| ||||||| |||||| || |||| ||    
T  5983391 taattcagtttagttagttttagctttatttttgattagtagtttgtttagaaacttgcacttgaagtaactaaatcaagttacttgcatgtgaagtaat 5983490  T
Q  346 gagtttgtt 354  Q
     ||||||||    
T  5983491 aagtttgtt 5983499  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 293
Target Start/End: Original strand, 1645027 - 1645075
Alignment:
Q  246 taattcattttagttagaattag-tcttatctttgtttagtagtttgtt 293  Q
    ||||||||||||||||||||||| | ||||||||| ||| |||||||||    
T  1645027 taattcattttagttagaattagtttttatctttgcttaatagtttgtt 1645075  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 276 - 354
Target Start/End: Original strand, 14685292 - 14685370
Alignment:
Q  276 tttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttatgagtttgtt 354  Q
    |||| ||||||||||||||||||| |||||  |||||||||||||||||||| |||||| || |||| || ||||||||    
T  14685292 tttgattagtagtttgtttagaaacttgcacttgaagtaactaactcaagttacttgcatgtgaagtgataagtttgtt 14685370  T

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Target: scaffold0014 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 288 - 391
Target Start/End: Original strand, 34386 - 34488
Alignment:
Q  288 tttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttatgagtttgtt-ctagttgtttgttacatcgcttgatgtataaa 386  Q
    |||||||||| | ||||||||||||||||||||| ||||| |||| | || |||| |||||||||||   |||  ||||||||||| |||||||||||||    
T  34386 tttgtttagatacttgcatgtgaagtaactaactaaagttacttgtatgtgaagtaatgagtttgttaggagt--tttgttacatcacttgatgtataaa 34483  T
Q  387 tactt 391  Q
    |||||    
T  34484 tactt 34488  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 354
Target Start/End: Complemental strand, 12221827 - 12221719
Alignment:
Q  246 taattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttat 345  Q
    ||||||||||||||| |||||||| ||||||||| ||||||||||||  |  |  |||||  |||||||||||||||||||| |||||  |  |||| ||    
T  12221827 taattcattttagttggaattagttttatctttggttagtagtttgtaaaatagcttgcacatgaagtaactaactcaagttacttgcgtgagaagtaat 12221728  T
Q  346 gagtttgtt 354  Q
    |||||||||    
T  12221727 gagtttgtt 12221719  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 302
Target Start/End: Original strand, 11171991 - 11172047
Alignment:
Q  246 taattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaattt 302  Q
    ||||||| |||||||||  ||||  ||||||||| ||||||||||||||||||||||    
T  11171991 taattcagtttagttagttttagctttatctttgattagtagtttgtttagaaattt 11172047  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 292 - 354
Target Start/End: Original strand, 27237247 - 27237309
Alignment:
Q  292 tttagaaatttgcatgtgaagtaactaactcaagtttcttgcacgtaaagttatgagtttgtt 354  Q
    |||||||| |||||  |||||||||||||||||||| |||||| || |||| || ||||||||    
T  27237247 tttagaaacttgcacttgaagtaactaactcaagttacttgcatgtgaagtaataagtttgtt 27237309  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 246 - 305
Target Start/End: Original strand, 53008170 - 53008229
Alignment:
Q  246 taattcattttagttagaattagtcttatctttgtttagtagtttgtttagaaatttgca 305  Q
    ||||||| |||||||||  ||||  ||||||||| ||||||||||||||||||| |||||    
T  53008170 taattcagtttagttagttttagctttatctttgattagtagtttgtttagaaacttgca 53008229  T

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