View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_18 (Length: 378)
Name: NF15712_low_18
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_18 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 19 - 378
Target Start/End: Complemental strand, 41161030 - 41160669
Alignment:
| Q |
19 |
gttccaccaccaatatcctgcatggattccttccctttgccaacaacgaccagtttttcctcgaccaaatcaaggcttccgctgcattttaattcgctgc |
118 |
Q |
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| T |
41161030 |
gttccaccaccaatatcctgcatggattccttccctttgccaacaacgaccagtttttcctcgaccaaatcaagtcttccgctgcattttagttcgctgc |
41160931 |
T |
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| Q |
119 |
taatcaccggttcttggccatgagaaacgatctccactagagtgaacacccgctggataaaagaaaaactgtgaagatatctcttccactttcccagttt |
218 |
Q |
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| T |
41160930 |
taatcaccggttcttggccatgagaaacgatctccattagagtgaacacccgctggataaaagaaaaactgtgaaaatatctcttccactttcccagttt |
41160831 |
T |
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| Q |
219 |
caattcttggtcacatctgatctctatcgatgccagtggatgttggtaataaaattgtgaacaaatttttgcttttcaagagaa--tttttctactataa |
316 |
Q |
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| T |
41160830 |
caattcttggtcacatctgatctctatcgatgccagtggatgttggtaataaaattgtgaacaaatttttgcttttcaagaggatttttttctactataa |
41160731 |
T |
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| Q |
317 |
aaactaccaagttaaatataagatgcttgagtaatgaaatgaactatgtggaactcctgtga |
378 |
Q |
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| T |
41160730 |
aaactaccaagttaaatataagatgcttgagtaatgaaatgaactatgtggaactcctgtga |
41160669 |
T |
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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 197
Target Start/End: Complemental strand, 32656699 - 32656515
Alignment:
| Q |
20 |
ttccaccaccaatatcctgcatggattccttccctttgccaacaacgaccagtttttcctcgaccaaatcaaggcttccgctgcattttaattcgctgct |
119 |
Q |
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||||||| |||| |||| |||||||||||||||| ||||||| || | ||||||||||| | |||||||||| | | ||||||||||| | ||| || |
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| T |
32656699 |
ttccacctccaacatccaacatggattccttccctatgccaactaccatcagtttttccttgtccaaatcaagtcattcgctgcatttttactcgtcact |
32656600 |
T |
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| Q |
120 |
aatcaccggttct--------tggccatgagaaacgatctccactagagtgaacacccgctggataaaagaaaaactgtgaagata |
197 |
Q |
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|||||| |||| | ||||||||||||| ||| ||||||||||||| || |||| |||| |||| ||||||||||||||| |
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| T |
32656599 |
aatcactggtttttatctcagtggccatgagaaatgatttccactagagtgacca-ccgccggattaaaggaaaactgtgaagata |
32656515 |
T |
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