View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_19 (Length: 375)
Name: NF15712_low_19
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 8 - 367
Target Start/End: Original strand, 46805789 - 46806148
Alignment:
| Q |
8 |
gagatgaagctattaagaaagccgaggaggcagttacagcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaaga |
107 |
Q |
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| T |
46805789 |
gagatgaagctattaagaaagccgaggaggcagttacagcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaaga |
46805888 |
T |
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| Q |
108 |
gtcattagagactgctcatgctgcacacttggaagcagaggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaa |
207 |
Q |
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| T |
46805889 |
gtcattagagactgctcatgctgcacacttggaagcagaggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaa |
46805988 |
T |
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| Q |
208 |
cttaaacaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaaggatctcaaatctaaactggaagcagcctctggtttgctgcttg |
307 |
Q |
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| T |
46805989 |
cttaaacaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaaggatctcaaatctaaactggaagcagcctctggtttgctgcttg |
46806088 |
T |
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| Q |
308 |
atttgaaagctaaattaactgtttatatggaatcaaagttaaagcaagaaggtgatgatg |
367 |
Q |
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| T |
46806089 |
atttgaaagctaaattaactgtttatatggaatcaaagttaaagcaagaaggtgatgatg |
46806148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 13 - 367
Target Start/End: Complemental strand, 5889088 - 5888734
Alignment:
| Q |
13 |
gaagctattaagaaagccgaggaggcagttacagcatccaaggaagtagagaagtcagtggaagatttaactattgaactaatagccacaaaagagtcat |
112 |
Q |
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| T |
5889088 |
gaagctattgacaaagccgaagatgctgttgctgcatcgaagcaagtagaaaagacggttgaagatttgactattgagttgattgccacaaaagagtctt |
5888989 |
T |
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| Q |
113 |
tagagactgctcatgctgcacacttggaagcagaggaacaaagaataggaacagtcatggcaagagatcaagattcactcaattgggagaaggaacttaa |
212 |
Q |
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| T |
5888988 |
tggaatcagcacattctgcacatatggaagcagaagaacacagaataggaacagtcatggcaagagatcaagattctctcaattgggagagggaactaaa |
5888889 |
T |
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| Q |
213 |
acaggcagaagaagagctccagagaatcaatgagcaaatgttgtctgcaaaggatctcaaatctaaac-tggaagcagcctctggtttgctgcttgattt |
311 |
Q |
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| T |
5888888 |
acaagaagaacaagaactagaaaaactcaatcaaaaaattttgtttgctatggatcttaaatctaaacatagta-aagcttctgcgttgcttcttgattt |
5888790 |
T |
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| Q |
312 |
gaaagctaaattaactgtttatatggaatcaaagttaaagcaagaaggtgatgatg |
367 |
Q |
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| T |
5888789 |
gaaagctgagttaaatgcctatatggaatcaaagtcaaaccaagaaggagatgatg |
5888734 |
T |
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