View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_2 (Length: 648)
Name: NF15712_low_2
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_2 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 563; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 11 - 648
Target Start/End: Original strand, 12224621 - 12225258
Alignment:
| Q |
11 |
catcatcatttccgggcacattatcaatccaactccactcatctcccttctctcgaccacgatcccacaacgccaacttcccaaccctctttgccgagaa |
110 |
Q |
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||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12224621 |
catcaccatttccaggcacattatcaatccaactccactcatctcccttctctcgaccacgatcccacaacgccaacttcccaaccctctttgccgagaa |
12224720 |
T |
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| Q |
111 |
gcaaaccctatcaccagctccaaacaccttaaacttccccgcctcctgaaaacacttaaacatctccaccggcatcctccccgcctcatcccactccatc |
210 |
Q |
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| T |
12224721 |
gcaaaccctatcaccagctccaaacaccttaaacttccccgcctcctgaaaacacttaaacatctccaccggcatcctccccgcctcatcccactccatc |
12224820 |
T |
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| Q |
211 |
atcccaagatcaagcctcaaaatcaaaatcgtcgaacacggtgaattcaacgaaaacgacgacttcaaaccaccaatcatcaaaatcctattcccaaccc |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12224821 |
atcccaagatcaagcctcaaaatcaaaatcgtcgaacatggtgaattcaacgaaaatgacgacttcaaaccaccaatcatcaaaatcctattcccaaccc |
12224920 |
T |
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| Q |
311 |
cacgaactaaccgcggcctctttaaaatatcaaaaacatcaccccattcctgccgctctatccgcgaccacttcccactcgtggtcgcagaaaagcaaca |
410 |
Q |
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| T |
12224921 |
cgcgaactaaccgcggcctctttaaaatatcaaaaacatcaccccattcctgccgctctatccgcgaccacttaccactcgtggtcgcagaaaagcagca |
12225020 |
T |
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| Q |
411 |
cgaaaacaatttccattggctcctccacggggagccaacttcacaaagcgcgtaagcccagtcctcaataagaactgggctccgcggctttgacggtaaa |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
12225021 |
cgaaaacaatttccattggctcctccacggggagccaacttcacaaagcgcgtaagcccagtcctcaataagaactgggctccgtggctttgacggtaaa |
12225120 |
T |
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| Q |
511 |
ttcgaagaaaatttctgccagctagaaattttatcattgtcatcagaactgccatggccagcnnnnnnnnncgcagctaattcagttaaaaccatgactc |
610 |
Q |
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| T |
12225121 |
ttcgacgaaaatttctgccagctagaaattttatcattgtcatcggaactgccatggccagcaaaataaaacgcagctaattcagttaaaaccattactc |
12225220 |
T |
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| Q |
611 |
ggttaactgaatcaactataacagatccatgtctacac |
648 |
Q |
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| T |
12225221 |
ggttaactgaatcaactataacagaaccatgtctacac |
12225258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 30 - 319
Target Start/End: Complemental strand, 17775365 - 17775076
Alignment:
| Q |
30 |
attatcaatccaactccactcatctcccttctctcgaccacgatcccacaacgccaacttcccaaccctctttgccgagaagcaaaccctatcaccagct |
129 |
Q |
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|||||||||||| | |||||||||||||||| || |||||||||||||||||||| || | |||||| |||| |||| |||||||||| ||| | |
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| T |
17775365 |
attatcaatccaccgccactcatctcccttcgaatcactgcgatcccacaacgccaactttccgatcctcttcgccgggaagaaaaccctatctccacca |
17775266 |
T |
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| Q |
130 |
ccaaacaccttaaacttccccgcctcctgaaaacacttaaacatctccaccggcatcctccccgcctcatcccactccatcatcccaagatcaagcctca |
229 |
Q |
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||||| |||||||||| || || || |||||| | |||||||||| | |||||||||||| | || |||||||||||| | |||||||||||||||| |
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| T |
17775265 |
ccaaaaaccttaaactcgccggcatcttgaaaataactaaacatctctatcggcatcctcccaacttcttcccactccatcgttccaagatcaagcctca |
17775166 |
T |
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| Q |
230 |
aaatcaaaatcgtcgaacacggtgaattcaacgaaaacgacgacttcaaaccaccaatcatcaaaatcctattcccaaccccacgaacta |
319 |
Q |
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|||||||||| |||||||| |||| ||||||| ||||| |||||||||| |||||| ||||| ||| | || ||||| ||||| |||| |
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| T |
17775165 |
aaatcaaaatagtcgaacatggtggattcaacttaaacgtagacttcaaactaccaataatcaagatcttgtttccaacaccacggacta |
17775076 |
T |
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