View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15712_low_26 (Length: 287)
Name: NF15712_low_26
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_26 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 14331575 - 14331312
Alignment:
| Q |
19 |
caaatatcctcaaaaagggttgaaaatggccacttcaaaaattatatgcatatttttcgaagttgcttattcactctttaatttaactaaaatttgatca |
118 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
14331575 |
caaatatccttgaaaactgttgaaaatggccacttcaaaaaatatgtgcatatttttcgaagttgcttatgcactctttaatttaactaaaattagatca |
14331476 |
T |
|
| Q |
119 |
cattcaagccttcaaaatgtttatttgtaaacttgtacacaggaaaaaagccaagtgatgctcaagtggatcagttagcgaatcttgtggaaaagtacac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14331475 |
cattcaagccttcaaaatgtttatttgtaaacttgtacacaggagaaaagccaagtggtgctcaagtggatcagttagcgaatcttgtggaaaagtacac |
14331376 |
T |
|
| Q |
219 |
tcttgcaaaccatctattttggggcttgtggggacttatttcagtaagcttttttcttctcact |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14331375 |
tcttgcaaaccatctattttggggcttgtggggacttatttcagtaagcttttttcttttcact |
14331312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 14424585 - 14424322
Alignment:
| Q |
19 |
caaatatcctcaaaaagggttgaaaatggccacttcaaaaattatatgcatatttttcgaagttgcttattcactctttaatttaactaaaatttgatca |
118 |
Q |
| |
|
|||||||||| |||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |
|
|
| T |
14424585 |
caaatatccttgaaaactgttgaaaatggccacttcaaaaaatatgtgcatatttttcgaagttgcttatgcactctttaatttaactaaaattagatca |
14424486 |
T |
|
| Q |
119 |
cattcaagccttcaaaatgtttatttgtaaacttgtacacaggaaaaaagccaagtgatgctcaagtggatcagttagcgaatcttgtggaaaagtacac |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14424485 |
cattcaagccttcaaaatgtttatttgtaaacttgtacacaggagaaaagccaagtggtgctcaagtggatcagttagcgaatcttgtggaaaagtacac |
14424386 |
T |
|
| Q |
219 |
tcttgcaaaccatctattttggggcttgtggggacttatttcagtaagcttttttcttctcact |
282 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
14424385 |
tcttgcaaaccatctattttggggcttgtggggacttatttcagtaagcttttttcttttcact |
14424322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 273
Target Start/End: Complemental strand, 44102852 - 44102787
Alignment:
| Q |
208 |
gaaaagtacactcttgcaaaccatctattttggggcttgtggggacttatttcagtaagctttttt |
273 |
Q |
| |
|
||||| || ||||| |||||||||||||| |||||||| |||||||||||||| ||||||| |||| |
|
|
| T |
44102852 |
gaaaaatatactctcgcaaaccatctattctggggcttatggggacttatttcggtaagctctttt |
44102787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University