View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_3 (Length: 607)
Name: NF15712_low_3
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 319; Significance: 1e-180; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 341
Target Start/End: Complemental strand, 4746847 - 4746517
Alignment:
| Q |
11 |
tgaaatgaaagagacaaagaaaatcaaatattacatatattgaaatataagattttatttatttatatttcaaggttttgtagatgaaccgaagcataga |
110 |
Q |
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| T |
4746847 |
tgaaaagaaagagacaaagaaaatcaaatattacatatattgaaatataagattttatttatttatatttcatggttttgtagatgaaccgaagcataga |
4746748 |
T |
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| Q |
111 |
tggatgaatacctggagataaggttatagatgagtgagtcaggatcagatttagcatatttggcgaaggtaggcatgttaccaaagaaaggccaacccat |
210 |
Q |
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| T |
4746747 |
tggatgaatacctggagataaggttatagatgagtgagtcaggatcagatttagcatatttggcgaaggtaggcatgttaccaaagaaaggccaacccat |
4746648 |
T |
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| Q |
211 |
atcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctccttaggaaaccaaacacaaatgcatatccacccaac |
310 |
Q |
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| T |
4746647 |
atcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctccttaggaaaccaaacacaaatgcatatccacccaac |
4746548 |
T |
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| Q |
311 |
aaagctgctactaggataaaccattgggaat |
341 |
Q |
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| T |
4746547 |
aaagctgctactaggatcaaccattgggaat |
4746517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 175 - 341
Target Start/End: Complemental strand, 4756289 - 4756123
Alignment:
| Q |
175 |
gaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
274 |
Q |
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| T |
4756289 |
gaaggtaggcatgttaccaaagaaaggccaacccatatcacctggtgggagattttgtgattttcccaacctaccaacatagtaccattcattcaatctc |
4756190 |
T |
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| Q |
275 |
cttaggaaaccaaacacaaatgcatatccacccaacaaagctgctactaggataaaccattgggaat |
341 |
Q |
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| T |
4756189 |
cttaggaaaccaaacacaaatgcatatccacccaacaaagctgctactaggatcaaccattgggaat |
4756123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 384 - 591
Target Start/End: Complemental strand, 4746471 - 4746267
Alignment:
| Q |
384 |
gcaatgtctttgataacttctttggttgctagtgtttatatagtgccaacgtatgtacatggatacnnnnnnnncttcccctcgttagaacaaatgtacg |
483 |
Q |
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| T |
4746471 |
gcaatgtctttgataacttctttggttgctagtgtttatatagtgccaacgtatgtacatggataccttttt---tttccctcgttagaaaaaatgtacg |
4746375 |
T |
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| Q |
484 |
gatacttatgagttactttgtacgtaagtaatgttaatgagtgcatgaagttacttgttaagcatcttaaagagtccttgtcaagtatcattctagcatt |
583 |
Q |
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| T |
4746374 |
gatgcttgtgagttactttgtacgtaagtaatgttaatgagtgcatgaagttacttgttaagcatcttaaagagtacttgtcaagtatcattttagcatt |
4746275 |
T |
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| Q |
584 |
ttttatat |
591 |
Q |
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|||||||| |
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| T |
4746274 |
ttttatat |
4746267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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