View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_30 (Length: 274)
Name: NF15712_low_30
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_30 |
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| [»] scaffold0276 (1 HSPs) |
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Alignment Details
Target: scaffold0276 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: scaffold0276
Description:
Target: scaffold0276; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 12 - 257
Target Start/End: Complemental strand, 15032 - 14787
Alignment:
| Q |
12 |
acagatcagaattgtataacagccaaacaaacacaatcggattacaattccaagcaataatgaagaaaatccattaaaaataaacaaagtagcaatagta |
111 |
Q |
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| T |
15032 |
acagatcagaattgtataacagccaaacaaacacaatcggattacaattccaagcaataatgaagaaaatccattaaaaataaacaaagtagcaatagga |
14933 |
T |
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| Q |
112 |
ataagcagatctggattcacatttcaacattcaaataatttggnnnnnnnntcaattaaattaccatttggctaaattttgtgcttcattttcggagacc |
211 |
Q |
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| T |
14932 |
ataagcagatctggattcacatttcaacattcaaataatttggaaaaaaaatcaattaaattaccatttggctaaattttgtgcttcattttcggagacc |
14833 |
T |
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| Q |
212 |
tttttgccacggagaacgtcaccgatatcatctgaaggctgtgtat |
257 |
Q |
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| T |
14832 |
tttttgccacggagaacgtcaccgatatcatctgaaggctgtgtat |
14787 |
T |
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