View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15712_low_4 (Length: 573)
Name: NF15712_low_4
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_4 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 469; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 469; E-Value: 0
Query Start/End: Original strand, 15 - 556
Target Start/End: Complemental strand, 27079870 - 27079329
Alignment:
| Q |
15 |
caaagggtatgctaaaggtgctgatgcggatcataaggtaacattcaaaggttatggtgttaataacacgtttaaggattacgataaaaaaggtatttct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27079870 |
caaagggtatgctaaaggtgctgatgcggatcataagataacattcaaaggttatggtgttaataacacgtttaaggattacgataaaaaaggtatttct |
27079771 |
T |
|
| Q |
115 |
tttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggtaagtttttccggg |
214 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | |
|
|
| T |
27079770 |
tttgctggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcaaaaaaatgggttcaacctggtaagtttttccgag |
27079671 |
T |
|
| Q |
215 |
aaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttttaccacgtaccattttgaccaaattacc |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
27079670 |
aaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccgccaaggtcgtttttaccacgtaccattttgaccaaattacc |
27079571 |
T |
|
| Q |
315 |
ctttgcatcttctaagttgaatgagttgaagcaagtctttaaggtgtctgagaattcctcaatggataagatgatagtggactcgttaggtgagtgtgag |
414 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
27079570 |
ctttgcatcttctaagttgaatgagttgaagcaagtttttaaggtgtctgagaattcctcgatggataagatgatagtggactcattgggtgagtgtgag |
27079471 |
T |
|
| Q |
415 |
agggcaccgagcatgggtgagacaaagcgttgtgttggttcacttgaggatatgattgactttgcaacttcagttttgggccgtgatgtaactgttcgat |
514 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
27079470 |
agggcaccgagtatgggtgagacaaagcgttgtgttggttcacttgaggatatgattgactttgcaacttcagttttgggccatgatgtaactgttcgat |
27079371 |
T |
|
| Q |
515 |
caactgagagtgtaaatggatcaggcaaaaatgtcatggttg |
556 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
27079370 |
caactgagagtgtaaatggatcgggcaaaaatgtcatggttg |
27079329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 15 - 554
Target Start/End: Complemental strand, 27066153 - 27065614
Alignment:
| Q |
15 |
caaagggtatgctaaaggtgctgatgcggatcataaggtaacattcaaaggtta---tggtgttaataacacgtttaaggattacgataaaaaaggtatt |
111 |
Q |
| |
|
|||||| |||||||||||||||||| ||||||||||| | || |||| ||| ||| |||||| || ||||||||||| || || ||||||||| |
|
|
| T |
27066153 |
caaaggctatgctaaaggtgctgatttagatcataaggtttcgtttaaagtttacaatgggaataataatacatttaaggattatgacaagaaaggtatt |
27066054 |
T |
|
| Q |
112 |
tcttttgccggttatactaagaaatcttcttcttcaacaaattctgttagtgaaagtgttagtttggcnnnnnnntgggttcaacctggtaagtttttcc |
211 |
Q |
| |
|
|||||||| |||||| ||| | || || ||||||| || ||| | ||||| |||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
27066053 |
tcttttgctagttataataaaa---ctactacttcaactaactctctcagtgatagtggtagtttggcaaaaaacatggttcaacctggtaagtttttcc |
27065957 |
T |
|
| Q |
212 |
gggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttttaccacgtaccattttgaccaaatt |
311 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||| ||||| | |||||||||||| | ||| |||||||| || ||| |||||||||||||||| |
|
|
| T |
27065956 |
gggagaagatgttgaaggaagggacagttatgcctatgccagatataagggataaattaccgccaaggtcgtttttgcctcgttccattttgaccaaatt |
27065857 |
T |
|
| Q |
312 |
accctttgcatcttctaagttgaatgagttgaagcaagtctttaaggtgtctgagaattcctcaatggataagatgatagtggactcgttaggtgagtgt |
411 |
Q |
| |
|
|| |||||||||||||||||||||||| |||||||||| || |||||||| |||||||| || ||| |||||||||| ||||| |||| ||||||| |
|
|
| T |
27065856 |
gccatttgcatcttctaagttgaatgagatgaagcaagttttcaaggtgtccgagaattcttcgatgaataagatgatggtggatgcgttgagtgagtgc |
27065757 |
T |
|
| Q |
412 |
gagagggcaccgagcatgggtgagacaaagcgttgtgttggttcacttgaggatatgattgactttgcaacttcagttttgggccgtgatgtaactgttc |
511 |
Q |
| |
|
|||||||| ||||| | ||||| || ||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||| | ||| ||||||| |
|
|
| T |
27065756 |
gagagggcgccgagtgtaggtgaaacgaagcgttgtgtgggttctcttgaggatatgattgattttgcaacttctgttttgggtcacagtgttactgttc |
27065657 |
T |
|
| Q |
512 |
gatcaactgagagtgtaaatggatcaggcaaaaatgtcatggt |
554 |
Q |
| |
|
| || ||||||| ||||||||| | ||||| |||||||||| |
|
|
| T |
27065656 |
ggtccactgagaatgtaaatggggcgggcaaggatgtcatggt |
27065614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 189 - 533
Target Start/End: Complemental strand, 27053537 - 27053193
Alignment:
| Q |
189 |
ggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgttttta |
288 |
Q |
| |
|
|||| |||| |||||||||||||| |||| ||||||||| ||||| |||||||||||||| |||| | |||||| ||||||| || |||||||| |
|
|
| T |
27053537 |
ggttgaaccaggtaagtttttccgcgaaaggatgttgaaggaagggactgttatgcctatgccagatacaagggataagttaccacctaggtcgtttttg |
27053438 |
T |
|
| Q |
289 |
ccacgtaccattttgaccaaattaccctttgcatcttctaagttgaatgagttgaagcaagtctttaaggtgtctgagaattcctcaatggataagatga |
388 |
Q |
| |
|
|||||| ||||||||| |||||| ||||||||||||||||||||||| | |||||||||| || ||||||||||| ||||||| ||||| ||||||| |
|
|
| T |
27053437 |
ccacgttccattttgatcaaattgccctttgcatcttctaagttgaacaatatgaagcaagttttcaaggtgtctgaaaattcctttatggaaaagatga |
27053338 |
T |
|
| Q |
389 |
tagtggactcgttaggtgagtgtgagagggcaccgagcatgggtgagacaaagcgttgtgttggttcacttgaggatatgattgactttgcaacttcagt |
488 |
Q |
| |
|
|||||||||| || |||||||||| || || || || | ||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| | |
|
|
| T |
27053337 |
tagtggactcattgagtgagtgtgaaagagcgccaagtaaaggtgagatcaagcgttgtgtaggttcgcttgaggacatgattgactttgcaacttctat |
27053238 |
T |
|
| Q |
489 |
tttgggccgtgatgtaactgttcgatcaactgagagtgtaaatgg |
533 |
Q |
| |
|
|||||| | |||| || ||||| || ||||||| ||||||||| |
|
|
| T |
27053237 |
tttgggtagcaatgtgacggttcggtccactgagaatgtaaatgg |
27053193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 494
Target Start/End: Original strand, 14866300 - 14866364
Alignment:
| Q |
430 |
ggtgagacaaagcgttgtgttggttcacttgaggatatgattgactttgcaacttcagttttggg |
494 |
Q |
| |
|
||||||||||| | |||||||| || ||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
14866300 |
ggtgagacaaaaagatgtgttgggtctattgaggatatgatcgactttgcaacttcggttttggg |
14866364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 187 - 290
Target Start/End: Original strand, 14866057 - 14866160
Alignment:
| Q |
187 |
tgggttcaacctggtaagtttttccgggaaaagatgttgaaacaaggggtggttatgcctatgccggatattaaggataaattaccacaaagatcgtttt |
286 |
Q |
| |
|
|||||| | |||||||||||||| | || || ||||||||| |||| ||| ||||||||||| ||||||| ||||||||||| |||| ||||||| |
|
|
| T |
14866057 |
tgggttgagcctggtaagttttttagagagaaaatgttgaaagaaggtacggtaatgcctatgcctgatattagagataaattacctaaaaggtcgtttt |
14866156 |
T |
|
| Q |
287 |
tacc |
290 |
Q |
| |
|
|||| |
|
|
| T |
14866157 |
tacc |
14866160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University