View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_41 (Length: 235)
Name: NF15712_low_41
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_41 |
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| [»] scaffold1384 (1 HSPs) |
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| [»] scaffold1183 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 220
Target Start/End: Original strand, 40588365 - 40588584
Alignment:
| Q |
1 |
catcatcattgttaacacaatctataggtttggtgtatgaaccaccaaggctaagaacttgaggcttaaggctaagttctttggactggtttttatgata |
100 |
Q |
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| T |
40588365 |
catcatcattgttaacacaatctataggtttggtgtatgaaccaccaaggctaagaacttgaggcttaaggctaagttctttggactggtttttatgata |
40588464 |
T |
|
| Q |
101 |
ttcagaagaaacttttgttgaagaaacttcaattggaagagcttgttcaacttcaactcttgatttaacaagagtgctagagaaaccagcttctctcata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40588465 |
ttcagaagaaacttttgttgaagaaacttcaattggaagagcttgttcaacttcaactcttgatttaacaagagtgctagagaaaccagcttctctcata |
40588564 |
T |
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| Q |
201 |
actctactaacacttggatc |
220 |
Q |
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|||||||||||||||||||| |
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| T |
40588565 |
actctactaacacttggatc |
40588584 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 165 - 220
Target Start/End: Original strand, 52806652 - 52806707
Alignment:
| Q |
165 |
ttaacaagagtgctagagaaaccagcttctctcataactctactaacacttggatc |
220 |
Q |
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| T |
52806652 |
ttaacaagagtactagagaatccagcttctctcataaccctactaacactaggatc |
52806707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1384 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1384
Description:
Target: scaffold1384; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 210
Target Start/End: Original strand, 681 - 727
Alignment:
| Q |
164 |
tttaacaagagtgctagagaaaccagcttctctcataactctactaa |
210 |
Q |
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| T |
681 |
tttaacaagtgtaccagagaaaccagcttctctcataactctactaa |
727 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1183 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold1183
Description:
Target: scaffold1183; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 164 - 210
Target Start/End: Complemental strand, 1004 - 958
Alignment:
| Q |
164 |
tttaacaagagtgctagagaaaccagcttctctcataactctactaa |
210 |
Q |
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||||||||| || || ||||||||||||||||||||||||||||||| |
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| T |
1004 |
tttaacaagtgtactcgagaaaccagcttctctcataactctactaa |
958 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 177 - 212
Target Start/End: Complemental strand, 16611526 - 16611491
Alignment:
| Q |
177 |
ctagagaaaccagcttctctcataactctactaaca |
212 |
Q |
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||||| |||||||||||||||||||||||||||||| |
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| T |
16611526 |
ctagaaaaaccagcttctctcataactctactaaca |
16611491 |
T |
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