View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_6 (Length: 494)
Name: NF15712_low_6
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 18 - 486
Target Start/End: Original strand, 52552925 - 52553395
Alignment:
| Q |
18 |
agatagatggtgtagattataagatagaaagaaaaagagnnnnnnnnnn-cta-ggtcatttttatttgtattgtcattgacttttatttgatgatatat |
115 |
Q |
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| T |
52552925 |
agatagatggtgtagattataagatagaaagaaaaagagaagaaaaaaaactaaggtcatttttatttgtattgtcattgacttttatttgatgatatat |
52553024 |
T |
|
| Q |
116 |
ttgttgatcagttgtgtgggtgaggttatgttgtaaggcatggtatctgctacaattaggcgaattgtgtcaccctgttggaggccatctattgagggtg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52553025 |
ttgttgatcagttgtgtgggtgaggttatgttgtaaggcatggtatctgctacaattaggcgaattgtgtcaccctgttggaggccatctattgagggtg |
52553124 |
T |
|
| Q |
216 |
aaaattctggtgatgcaagtggacgttccgatggtttattatggtataaagattttggaagacattcagatggtgatttctcaatggctgttgttcaagc |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52553125 |
aaaattctggtgatgcaagtggacgttccgatggtttattatggtataaagattttggaagacattcagatggtgatttctcaatggctgttgttcaagc |
52553224 |
T |
|
| Q |
316 |
aaacaatttgttggaggatcaatgtcaagttgaatcaggacccatgagctcaattgaaggaagtcctcgaggtacttttgttggtgtatatgacgggcat |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52553225 |
aaacaatttgttggaggatcaatgtcaagttgaatcaggacccatgagctcaattgaaggaagtcctcgaggtacttttgttggtgtatatgacgggcat |
52553324 |
T |
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| Q |
416 |
ggaggtccagaaactgcccgctttgtcaatggacgcctatttaaacatatcaagagtatgcttttcttctc |
486 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52553325 |
ggaggtccagaaactgcccgctttgtcaatggacgtctatttaaacatatcaagagtatgcttttcttctc |
52553395 |
T |
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