View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15712_low_9 (Length: 451)
Name: NF15712_low_9
Description: NF15712
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15712_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 41083835 - 41083399
Alignment:
| Q |
1 |
aattcatatttattgaaagagcaaagtttactactgttacatttacgcgatgctaccaaaacacacgaagcttgtttcccttgatatggcaagcaacatg |
100 |
Q |
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| T |
41083835 |
aattcatatttattgaaagagcaaagtttactactgttacatttacgcgatgctaccaaaacacacgaagcttgtttcccttgatatggcaagcaacatg |
41083736 |
T |
|
| Q |
101 |
aattaatgctgattacaaggtacgattatccagctccaattttcaatattccttggcaatttcttcattgcgttaaacgtgaaattaatcttcctgtttt |
200 |
Q |
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| T |
41083735 |
aattaatgctgattacaaggtacaattatccagctccaatttttaatattccttggcaatttcttcattgcgttaaacgtgaaattaatcttcctgtttt |
41083636 |
T |
|
| Q |
201 |
gcgacaaagattccaggaaaggaaaacaaacaagatttggtgacattttgttgttatggactgtggaacatggaaatgtctcgaaaggtttcaattattt |
300 |
Q |
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| T |
41083635 |
gcgacaaagattccaggaaaggaaaacaaacaagatttggtgacattttgttgttatggactgtggaacatggaaatgtctcgaaaggtttcaattattt |
41083536 |
T |
|
| Q |
301 |
gttgcaggccaactatttgatgatatttttctttcttgatgttaacctcattcatattctagcttttatctataaagataaagataatggatgattataa |
400 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41083535 |
gtcgcaggccaactatttgatgatatttttctttcttgatgttaacctcattcatattctagcttttatctataaagataaagataatggatgattataa |
41083436 |
T |
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| Q |
401 |
tttttgcattctttctacccacgttgacatttcaact |
437 |
Q |
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| T |
41083435 |
tttttgcattctttctacccacgttgacatttcaact |
41083399 |
T |
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