View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15713_high_11 (Length: 222)

Name: NF15713_high_11
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15713_high_11
NF15713_high_11
[»] chr8 (3 HSPs)
chr8 (16-206)||(19771554-19771744)
chr8 (162-204)||(26445518-26445560)
chr8 (109-153)||(32818436-32818480)
[»] scaffold0913 (1 HSPs)
scaffold0913 (161-204)||(1278-1321)
[»] scaffold0898 (1 HSPs)
scaffold0898 (161-204)||(4280-4323)
[»] chr5 (2 HSPs)
chr5 (80-152)||(9634871-9634943)
chr5 (162-204)||(28734173-28734215)
[»] chr7 (1 HSPs)
chr7 (162-204)||(38622880-38622922)
[»] chr6 (2 HSPs)
chr6 (162-204)||(770360-770402)
chr6 (162-204)||(21869881-21869923)
[»] chr3 (2 HSPs)
chr3 (163-203)||(2101660-2101700)
chr3 (80-120)||(21866679-21866719)


Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 16 - 206
Target Start/End: Original strand, 19771554 - 19771744
Alignment:
Q  16 caaaggcagaaaagagctagcgtataaactcaaatagcaggcataatcttcgaaacaaccagtattgtcaattgtagattgctgaagatagcggtttgtt 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  19771554 caaaggcagaaaagagctagcgtataaactcaaatagcaggcataatcttcgaaacaaccagtattgtcaattgtagattgctgaagatagcagtttgtt 19771653  T
Q  116 caaatgttgctacgctacaatgctatagtgccgctatctatagtgtctatttgacaacgctttgtgctaaatagtgtatcacggaacaaca 206  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19771654 caaatgttgctacgctacaatgctatagtgccgctatctatagtgtctatttgacaacgctttgtgctaaatagtgtatcacggaacaaca 19771744  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 26445518 - 26445560
Alignment:
Q  162 ctatttgacaacgctttgtgctaaatagtgtatcacggaacaa 204  Q
    ||||||||||||||||||| |||||||||| |||||| |||||    
T  26445518 ctatttgacaacgctttgtactaaatagtggatcacgaaacaa 26445560  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 109 - 153
Target Start/End: Complemental strand, 32818480 - 32818436
Alignment:
Q  109 gtttgttcaaatgttgctacgctacaatgctatagtgccgctatc 153  Q
    |||||||||||| | ||| ||||||| ||||||||||||||||||    
T  32818480 gtttgttcaaatttcgctgcgctacagtgctatagtgccgctatc 32818436  T

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Target: scaffold0913 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0913
Description:

Target: scaffold0913; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 1278 - 1321
Alignment:
Q  161 tctatttgacaacgctttgtgctaaatagtgtatcacggaacaa 204  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  1278 tctatttgacaacactttgtactaaatagtgtatcacggaacaa 1321  T

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Target: scaffold0898 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0898
Description:

Target: scaffold0898; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 161 - 204
Target Start/End: Complemental strand, 4323 - 4280
Alignment:
Q  161 tctatttgacaacgctttgtgctaaatagtgtatcacggaacaa 204  Q
    ||||||||||||| |||||| |||||||||||||||||||||||    
T  4323 tctatttgacaacactttgtactaaatagtgtatcacggaacaa 4280  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 152
Target Start/End: Original strand, 9634871 - 9634943
Alignment:
Q  80 ttgtcaattgtagattgctgaagatagcggtttgttcaaatgttgctacgctacaatgctatagtgccgctat 152  Q
    |||||||||| ||||| | ||| ||||||||||||||||||   ||||||| ||| |||||||| ||||||||    
T  9634871 ttgtcaattgcagattacagaaaatagcggtttgttcaaattccgctacgcaacattgctatagcgccgctat 9634943  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 28734173 - 28734215
Alignment:
Q  162 ctatttgacaacgctttgtgctaaatagtgtatcacggaacaa 204  Q
    |||||||||||| |||||| |||||||| ||||||||||||||    
T  28734173 ctatttgacaactctttgtactaaatagcgtatcacggaacaa 28734215  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Original strand, 38622880 - 38622922
Alignment:
Q  162 ctatttgacaacgctttgtgctaaatagtgtatcacggaacaa 204  Q
    ||||||||||||  ||||||||||||||||||||| |||||||    
T  38622880 ctatttgacaacattttgtgctaaatagtgtatcatggaacaa 38622922  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 770402 - 770360
Alignment:
Q  162 ctatttgacaacgctttgtgctaaatagtgtatcacggaacaa 204  Q
    |||||||||||| |||||| |||||||| ||||||||||||||    
T  770402 ctatttgacaaccctttgtactaaatagcgtatcacggaacaa 770360  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 21869923 - 21869881
Alignment:
Q  162 ctatttgacaacgctttgtgctaaatagtgtatcacggaacaa 204  Q
    ||||||||||||  ||||| |||||||||||||||||||||||    
T  21869923 ctatttgacaacattttgtactaaatagtgtatcacggaacaa 21869881  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 163 - 203
Target Start/End: Original strand, 2101660 - 2101700
Alignment:
Q  163 tatttgacaacgctttgtgctaaatagtgtatcacggaaca 203  Q
    ||||||||||| |||||| |||||||||||||| |||||||    
T  2101660 tatttgacaacactttgtactaaatagtgtatcgcggaaca 2101700  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 80 - 120
Target Start/End: Complemental strand, 21866719 - 21866679
Alignment:
Q  80 ttgtcaattgtagattgctgaagatagcggtttgttcaaat 120  Q
    ||||||||||| |||||| ||| ||||||||||||||||||    
T  21866719 ttgtcaattgtggattgcagaaaatagcggtttgttcaaat 21866679  T

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