View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15713_high_2 (Length: 639)
Name: NF15713_high_2
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 15 - 623
Target Start/End: Complemental strand, 31455454 - 31454846
Alignment:
| Q |
15 |
atgaatagtaaaagagaacgaaatatagatattgtgatggtggtagcttctcttaaaaccttagccaaaaatattaaattttgatcttgtcccataatag |
114 |
Q |
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| T |
31455454 |
atgaatagtaaaagagaacgaaatatagatattgtgatggtggtagcttctcttaaaaccttagccaaaaatattaaattttgatcttggcccataatag |
31455355 |
T |
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| Q |
115 |
aaaaaagctttactttgttttccattttcttcatttcactaagttgcttagaaatttccttctttgccttctttctaaagcaatcatactcatatatgct |
214 |
Q |
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| T |
31455354 |
aaaaaagctttactttgttttccattttcttcatttcaccaagttgctttgaaatttccttctttgccttctttctaaagcaatcatactcatatatgct |
31455255 |
T |
|
| Q |
215 |
gctttcaatgcttgaagttgaatttcctcgtcttctacgtatagcggattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaa |
314 |
Q |
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| T |
31455254 |
gctttcaatgcttgaagttgaatttcctcgtcttctacgtatagccgattgaagtgtttccacatgttccttgagattcaagagtaattcccttgatgaa |
31455155 |
T |
|
| Q |
315 |
ctacatgcatctaaaagtgtaactgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattgga |
414 |
Q |
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| T |
31455154 |
ccacatgcatctaaaagtgtaactgaaccacttaatgaatcttccactagcttcccattttgatagtgtaaaagtgcttgttgtgtttgttgagattgga |
31455055 |
T |
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| Q |
415 |
agagttcttccatgcaattgtatagctctgcaagcacaactaaatcactttgaattgtctctgattcaaaacataatgtatttgaaagagattgagatga |
514 |
Q |
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| T |
31455054 |
agagttcttccatgcaattgtataactcagcaagcacaaccaaatcactttgaattgtctctgattcaaaacataatgtatttgaaagagattgagatga |
31454955 |
T |
|
| Q |
515 |
agattgtggtttaagatggttcaataatgcttcaactctttgtgaagatgggtgtattcttgttggcaaactaattgatcttaatggttgatgagtagat |
614 |
Q |
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| T |
31454954 |
agattgtggtttaagatggttcaataatgcttcaactctttgtgaagatgggtgtattcttgttggcaaactaattgatcttaatggttgatgagtagat |
31454855 |
T |
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| Q |
615 |
ggtaacatt |
623 |
Q |
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| T |
31454854 |
ggtaacatt |
31454846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 392 - 477
Target Start/End: Original strand, 9385376 - 9385461
Alignment:
| Q |
392 |
ttgttgtgtttgttgagattggaagagttcttccatgcaattgtatagctctgcaagcacaactaaatcactttgaattgtctctg |
477 |
Q |
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|||||| |||||| |||| | ||||||||||||||| |||||||| | |||||||||| | ||||| ||||| |||||| |||||| |
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| T |
9385376 |
ttgttgagtttgtggagagttgaagagttcttccatacaattgtaaatctctgcaagccctactaagtcactctgaattttctctg |
9385461 |
T |
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