View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15713_high_4 (Length: 439)
Name: NF15713_high_4
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 3 - 423
Target Start/End: Complemental strand, 10238470 - 10238048
Alignment:
| Q |
3 |
ggcaaaggttctgccaagtgggtcaatttaagtgannnnnnngcgaagataagggggtttgggaaggcagatggaaagaagcacacgaaaatagaaattg |
102 |
Q |
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| T |
10238470 |
ggcaaaggttcttccaagtggatcaatttaagtgaattttttgagaagatcaagtggaaagggaaggtaaatggaaagaagcacaagaaaatagaaattg |
10238371 |
T |
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| Q |
103 |
ggctttttagcttttatagtcgatttgtttgtggaggaaatagagtactcacgtgatcataataaggtggtgagaatttgtgtttttactcttcattctt |
202 |
Q |
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| T |
10238370 |
ggctttttagcttttatagtcgatttgtttgtggaggaaatagagtactcacatgatcataataaggtggtgagaatttgtgtttttactcttcattctt |
10238271 |
T |
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| Q |
203 |
aatgtattgcatcattgaacttttatcttttgaaattgtttgaaaaataaatctaattttgttcttag--nnnnnnnaaagcaaattgtgttcttagtta |
300 |
Q |
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| T |
10238270 |
aatgtattgcatcattgaacttttatcttttgaaattgtttgaaaaataaatctaattttgttcttagttttttttttaagcaaattatgttcttagtta |
10238171 |
T |
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| Q |
301 |
ttctcttttgtaattgtgatatatatagagcttgtaagatgacatgcttagatattttcagtcctcaagtcaagagggaaagggggtcttcctaaatctt |
400 |
Q |
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| T |
10238170 |
ttctcttttgcaattgtgatatatatagagcttgtaagatgacatgcttagatattttcagtcctcaagtcaagagggaaagagggtcttcctaaatctt |
10238071 |
T |
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| Q |
401 |
acatgttatttcttctagaaaaa |
423 |
Q |
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| T |
10238070 |
acatgttatttcttctagaaaaa |
10238048 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 81 - 217
Target Start/End: Complemental strand, 10270026 - 10269890
Alignment:
| Q |
81 |
aagcacacgaaaatagaaattgggctttttagcttttatagtcgatttgtttgtggaggaaatagagtactcacgtgatcataataaggtggtgagaatt |
180 |
Q |
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||||||| ||||||| ||||||| || |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||||||| | |||||| |
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| T |
10270026 |
aagcacaggaaaatataaattggactaattagcttttatagtcgatttgtttgtggaggaaatagagtactcacatgaacaaaataaggtgctcagaatt |
10269927 |
T |
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| Q |
181 |
tgtgtttttactcttcattcttaatgtattgcatcat |
217 |
Q |
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| T |
10269926 |
tctgtttttactcctcattcttaatatattgcatcat |
10269890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 323 - 422
Target Start/End: Complemental strand, 10261766 - 10261668
Alignment:
| Q |
323 |
atatagagcttgtaagatgacatgcttagatattttcagtcctc-aagtcaagagggaaagggggtcttcctaaatcttacatgttatttcttctagaaa |
421 |
Q |
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||||||||||| ||||||||||||||||||||||||| |||||| |||||| |||||||||| ||||||||||||||||| | || ||||||||| ||| |
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| T |
10261766 |
atatagagcttataagatgacatgcttagatattttccgtcctcaaagtca--agggaaagggtgtcttcctaaatcttactttttttttcttctaaaaa |
10261669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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