View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15713_high_9 (Length: 227)
Name: NF15713_high_9
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 32553222 - 32552998
Alignment:
| Q |
1 |
ataacggatttcacattgacattcacattctaatgatttcacattgaaatctttcttattgaataagatattctccaacattgagagaattttcacttgg |
100 |
Q |
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| T |
32553222 |
ataacggatttcacattgacattcacattctaatgatttcacattgaaatctttcttgttgaataagatattctccaacattgagagaattttcacttgg |
32553123 |
T |
|
| Q |
101 |
acaacacttacctaaccaagtagtacttttattccttattctttgatgcctgggaaatatctttatcccttattctaattcatattaatgttgcaatatc |
200 |
Q |
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| T |
32553122 |
acaacacttacctaaccaagtagtacttttattccttattctttgatgcctgggaaatatctttatcccttattctaattcatattaatgttgcaatatc |
32553023 |
T |
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| Q |
201 |
catcgaccttgtttaaggacactta |
225 |
Q |
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| T |
32553022 |
catcgaccttgtttaaggacactta |
32552998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 32549839 - 32549744
Alignment:
| Q |
64 |
taagatattctccaacattgagagaattttcacttgga-caacacttacctaaccaagtagtacttttattccttattctttgatgcctgggaaatat |
160 |
Q |
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| T |
32549839 |
taagatattctccgacattgagagaattttcacttggaccaacactt--gtaaccatgtagtattcttatttcttattctttgatgcctgggaaatat |
32549744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 32550020 - 32549977
Alignment:
| Q |
7 |
gatttcacattgacattcacattctaatgatttcacattgaaat |
50 |
Q |
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| T |
32550020 |
gatttcacattgacattaacattccaatgatttcacattgaaat |
32549977 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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