View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15713_low_10 (Length: 407)
Name: NF15713_low_10
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 396
Target Start/End: Complemental strand, 21102397 - 21102017
Alignment:
| Q |
16 |
caaacatcctctacctctcatgttgttgaagttaatggttagtttttcatttataaattgtttttccaaatatatgtatatatggatatttctcattgcc |
115 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |||| |
|
|
| T |
21102397 |
caaacatcctctacctctcttgttgttgaagttaatggttagtttttcatttataatttgtttttccaaatatatgtatatatggatatttctaaatgcc |
21102298 |
T |
|
| Q |
116 |
cttatgttgtgttactatgtcgacactactcatgctaaatttattgctgaagacactagtattgataaatttgtcattcatcacaaccttcaagtggaac |
215 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||| ||| || ||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21102297 |
cttatgttgtgttactatgtagacactactcatgataaatttatggctaaatacactagtagtgataaatttgtcattcatcacaaccttcaagtggaac |
21102198 |
T |
|
| Q |
216 |
ttgctcaaatatgcaactcatatggcatccctccaccatcttacacattacaagagaagaggattattgctggatatgagtacatgaggttttatggtgc |
315 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
21102197 |
ttgctcaaatatgcaacccatatggcatccctccaccatcttacacattacaagagaagaggattattgctggatatgagtacatgaggttttatggttc |
21102098 |
T |
|
| Q |
316 |
attggtttcgggatcagttagaaaaccttctgtttcgattggaagatatgcaaaaactgagtttgatgcaaaggatgatgt |
396 |
Q |
| |
|
||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
21102097 |
attggtttcgggatcagttggaaaaccatctgtttcgattggaagatatgcaaaaactgagtttgatgcaaaggaagatgt |
21102017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University