View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15713_low_12 (Length: 324)
Name: NF15713_low_12
Description: NF15713
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15713_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 50130427 - 50130730
Alignment:
| Q |
1 |
acaacctattgaacttccctttgcaattattttacaagcaatagggatgtgtggaagtgcatgatcttcacaaaaacagtgagggaacttctataatatc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||| |
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| T |
50130427 |
acaacctattgaacttccctttgcaattattttacaagcaatagggatgtgtggaagtacattatcttcacaaaaatagtgagggaacttctataatatc |
50130526 |
T |
|
| Q |
101 |
aatatataagttaaaattaaatccaggttnnnnnnnnnngttaaattaattcgataaaacttacattaacaaaattgattccctcaccgccgtcgtttct |
200 |
Q |
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| T |
50130527 |
aatatataagttaaa-ttaaatccaggttaaaaaaaaaagttaaattaattcgataaaacttacattaacaaaattgattccctcaccgccgtcgtttct |
50130625 |
T |
|
| Q |
201 |
tcgtcgctcagaggctcctaaagggacaacagaattgctccaagtaacgctcactgcctccaccaaaagaatcgaacaacaatatacagcaacaactgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
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| T |
50130626 |
tcgtcgctcagaggctcctaaagggacaacagaactgctccaagtaacgctcactgcctccatcaaaagaatcgaacaacaatcctcagcaacaactgga |
50130725 |
T |
|
| Q |
301 |
aattg |
305 |
Q |
| |
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||||| |
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| T |
50130726 |
aattg |
50130730 |
T |
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